Gene Rfer_3866 details

Gene Information

• Locus tag: Rfer_3866
• Symbol: secD
• ID: 3961468
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: -
• Start bp: 4316769
• End bp: 4318649
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637918691
• Product: preprotein translocase subunit SecD
• Protein accession: YP_525096
• Protein GI: 89902625
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCGTT ACCCAGTCTG GAAGTACGTG ATCATCTTGA TCGCGCTGGT GGTGGGGGTC 
GTGTACACCC TGCCCAATTT TTTTGGTGAA GCCCCGGCGG TGCAGGTGTC GGCGGTCAAG 
GTGGGCGTCA AGGTCGACAG CAGCACAAAA GTGCAAGTCG AAGCAGTCTT GCAGACCGCA 
GGCCTGGCCG CTGATGTGGT GACGCTGGAC GGCAACTCGG TCAAAGCGCG CTTTGGCAAC 
ACTGAGACCC AACTCAAGGC CAAGGATGCG ATTCAAAAAG CCTTGATTCC TGACCCGGCC 
AACCCCAACT ACATAGTGGC GCTTAATTTG CTGTCGCGCT CCCCGACCTG GCTGACCGCT 
TTGCGCGCCT TTCCCATGTA TCTGGGGCTG GATTTGCGGG GCGGCGTGCA CTTCATGTTG 
CAGGTGGACA TGCAAGCGGC GCTGACTAAA AAAGCTGAAT CGTTGACCGG TGACATTCGA 
ACCAGCCTGC GCGAGAAAAA TGTTCGCCAC AGCGGCATCA ACCGCAACGG CCAGACCATC 
GAAGTGCGTT TTCGCGATGC GCAAACGCTT GAAGCGGCCA AAGAGATCCT GCTGGATCAA 
TTTGCCGACC TGCAATCGGT GGACGCGCTG GACGGCACCG ATTACAAACT GACGGCCTCC 
ATCAAGCCCG TGGCGGCGCT ACGGGTGCAG ACCCAAGCGC TCAAGCAGAA CATCACCACC 
TTGCACAACC GTATCAATGA GCTGGGTGTG TCTGAACCGG TCATCCAGCA GCAGGGCTTG 
GACCGGATTG TGGTGGAGTT GCCGGGTGTG CAGGACACCG CCAAGGCGAA AGATATTCTG 
GGGCGCACCG CCACCCTCGA AGTGCGCATG GTGGATGAAA GCAGTGAAGC GCGGGCGGCC 
GAGGGTGGTA CGGCGGCGGT ACCGTTTGGG TCCGAGCGCT TCCTGGAACG CAGTGGCCAG 
CCCGTGATCG TGAAAAAACA GGTGATTTTG ACCGGTGAGA ACTTGACCGA TGCCCAGCCC 
GGTTTTGACA GCCAGACGCA AGAAGCCGTG GTCAACCTGA CGCTGGACGC CAAGGGCGCG 
CGGATCTTTC GCGATGTCAC GCGTGAAAGT GTCGGCAAGC GCATGGCGAT TTTGCTGTTC 
GAGAAGGGCA AGGGCGAAGT GGTCACCGCG CCCGTGATTC GCTCGGAGAT TGGCGGCGGA 
CGGGTGCAGA TCTCGGGCCG CATGACCGCG ATGGAAGCCA CCGACACGGC CTTGCTGCTG 
CGCGCCGGCT CACTGGCCGC ACCGATGGAA ATCATCGAAG AAACCACCAT TGGCCCAAGT 
CTGGGTGCGG AGAATATTGC CAAGGGCTTT AACAGCGTCA CCTACGGCTT TGCGGCGGTC 
ACGGTCTTCA TGTGCGTCTA CTACGTGCTG TTTGGCCTGT TTTCGAGTAT CTCGCTGGCC 
GTCAATCTGC TGCTGCTGGT GGCGGTGCTG TCGATGCTGC AGGCCACCTT GACGCTACCG 
GGCATGGCCG CGATGGCGCT GGTGATCGGC ATGGCGATTG ATGCCAACGT GCTGATCAAC 
GAGCGGGTGC GCGAAGAGTT GCGCAATGGC GCCTCGGCGC AGGCCGCCAT CCACGCTGGC 
TATGACCGGG CCTGGGCCAC GATTTTGGAT TCCAATGTCA CCACCTTGAT TGTCGGGCTG 
GCCTTGTTGA CGTTCGGTTC CGGTCCGGTG CGTGGCTTTG CGGTGGTGCA CGTTCTTGGC 
ATTCTGACCA GCATGTTCTC CGGCGTGTTC TTTTCCAGAG GCCTGGTCAA TTTGTGGTAC 
GGCCGGCAAA ACAAGCTCAA GACGGTGTCC ATTGGGACCA TCTGGCGCCC TGAACCCGAT 
GCGCCGGTAG CCCCGAAATA A 

 

Protein sequence

MNRYPVWKYV IILIALVVGV VYTLPNFFGE APAVQVSAVK VGVKVDSSTK VQVEAVLQTA 
GLAADVVTLD GNSVKARFGN TETQLKAKDA IQKALIPDPA NPNYIVALNL LSRSPTWLTA 
LRAFPMYLGL DLRGGVHFML QVDMQAALTK KAESLTGDIR TSLREKNVRH SGINRNGQTI 
EVRFRDAQTL EAAKEILLDQ FADLQSVDAL DGTDYKLTAS IKPVAALRVQ TQALKQNITT 
LHNRINELGV SEPVIQQQGL DRIVVELPGV QDTAKAKDIL GRTATLEVRM VDESSEARAA 
EGGTAAVPFG SERFLERSGQ PVIVKKQVIL TGENLTDAQP GFDSQTQEAV VNLTLDAKGA 
RIFRDVTRES VGKRMAILLF EKGKGEVVTA PVIRSEIGGG RVQISGRMTA MEATDTALLL 
RAGSLAAPME IIEETTIGPS LGAENIAKGF NSVTYGFAAV TVFMCVYYVL FGLFSSISLA 
VNLLLLVAVL SMLQATLTLP GMAAMALVIG MAIDANVLIN ERVREELRNG ASAQAAIHAG 
YDRAWATILD SNVTTLIVGL ALLTFGSGPV RGFAVVHVLG ILTSMFSGVF FSRGLVNLWY 
GRQNKLKTVS IGTIWRPEPD APVAPK