| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3838 |
|---|
| Symbol | |
|---|
| ID | 3961440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 4284389 |
|---|
| End bp | 4285519 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637918663 |
|---|
| Product | acyl-CoA dehydrogenase-like |
|---|
| Protein accession | YP_525068 |
|---|
| Protein GI | 89902597 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCTAA CCCAAGACCA GGAAATGATC CGCGACGCGG TGCGCGCCTT TGCCCAAGCC
GAACTCTGGC CCAACGCCGC CCAGTGGGAC AAGGAGCACA CTTTTCCCAA GGAGGCGCAC
CAGGGGCTGG CCGCGCTGGG CGCCTACGGC ATTTGCGTGC CGGAAGAACT GGGCGGCGCC
AACATGGACT ACCTGACGGT GGCGCTGGTG CTGGAGGAAA TCGCCGCCGG TGACGGTGGC
ACCAGCACCG CGATCAGCGT CACCAACTGT CCGGTCAACG CCATCCTGAT GCGCTACGGC
AATACCGCGC AGAAGAGGCA ATGGCTGACG CCGCTCGCGC AAGGCCAGTT GCTGGGTGCG
TTTTGCCTGA CCGAACCGCA TGTGGGCTCG GACGCGTCCG GCCTGCGCAC CACGGCCACG
CGCGAAGGTG ATGCTTATGT CATCAACGGC GTCAAGCAGT TCATCACCAG CGGCCAGAAC
GGCGACGTGG CCATCGTCAT TGCCGTCACC GACAAGGGCG CGGGCAAGAA GGGCATGAGT
GCCTTCATCG TGCCGACCAA CGCACCCGGC TACGTGGTGG CCCGGCTGGA AGACAAGCTC
GGCCAGCACA GCAGCGACAC GGCACAGATC AACTTTGACA ACTGCCGCAT TCCTGCAGAG
AACCTGATTG GACTGGAGGG CGAGGGCTAC AAGATTGCCT TGGGCGCCCT GGAGGGTGGG
CGCATCGGCA TTGCCGCGCA GAGCGTGGGC ATGGCGCGCA GCGCGTTTGA GGTGGCGCTG
GCCTACGCCA AAGAGCGGCA AAGCTTTGGT ACCGCCATCT TCAACCACCA GGCGGTCGGT
TTCCGCCTGG CCGAGTGCGC CACGCAGATC GAGGCGGCGC GCCAGCTCAT CTGGCATGCA
GCCGCCTTGC GCGACGCCGG CCGCCCGTGC CTGAAAGAAG CCGCCATGGC CAAGCTGTTT
GCCAGCGAAA TGGCCGAGCA GGTCTGCAGC GCCGCCATCC AGACCCTGGG CGGCTACGGC
TATGTCAGCG ACTTTCCCGT CGAGCGCATC TACCGCGACG TGCGCGTGTG CCAGATTTAT
GAAGGCACGT CGGACGTGCA GAAGATCATC ATTCAAAGAG CACTTTCCTG A
|
|---|
| Protein sequence | MLLTQDQEMI RDAVRAFAQA ELWPNAAQWD KEHTFPKEAH QGLAALGAYG ICVPEELGGA
NMDYLTVALV LEEIAAGDGG TSTAISVTNC PVNAILMRYG NTAQKRQWLT PLAQGQLLGA
FCLTEPHVGS DASGLRTTAT REGDAYVING VKQFITSGQN GDVAIVIAVT DKGAGKKGMS
AFIVPTNAPG YVVARLEDKL GQHSSDTAQI NFDNCRIPAE NLIGLEGEGY KIALGALEGG
RIGIAAQSVG MARSAFEVAL AYAKERQSFG TAIFNHQAVG FRLAECATQI EAARQLIWHA
AALRDAGRPC LKEAAMAKLF ASEMAEQVCS AAIQTLGGYG YVSDFPVERI YRDVRVCQIY
EGTSDVQKII IQRALS
|
|---|
| |