Gene Rfer_3764 details

Gene Information

• Locus tag: Rfer_3764
• ID: 3961113
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 4199703
• End bp: 4201616
• Gene Length: 1914 bp
• Protein Length: 637 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637918590
• Product: diguanylate cyclase/phosphodiesterase
• Protein accession: YP_524995
• Protein GI: 89902524
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain; [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCCTCA TCAAACAACT CTGGATTGCC ATCGCCTTGG TCATGACGCT TGCCTTTGGC 
GGCAGCATGG TCGTCAGCGT TTTGTCGGCT CGCCATTACC TGGAGCAGCA GTTGCAGGTC 
AAAAACATCG ACAACGCCAA TGCGCTGGCC TTGTCGTTGT CGCAACTGCC TAAGGATCCG 
GTGATGATCG AGTTGCAGGT GGCCGCACAG TTTGATGCCG GGCATTACAG CGTCATCCGC 
ATCACCTCCC CGACGGGCAA AACCCTGGTG GAGCGCGTGT TTTCGGGGGC GCTCACGGGC 
GTGCCACACT GGTTCATCGC CCTGACTCCC ATCAACGCCG CACCCGGTCA AGCCCTGGTT 
CAGGATGGCT GGAACCAATA CGGCACGCTG ACACTTGAAA GCCAGGAGCA ATACGCCTAC 
CAAAGCCTGT GGGACGGCAC CCTGAAGTTG CTGCTGTGGT TTGTGCTGGG CGGGCTGGTC 
ACAGGGGCGG TCGGCACCCT GCTCATCCGC ATCATCACCC GGCCGCTGGG CGAGGTGGTG 
GCCCAGGCCC AGGCCATTGC CGAGCGCCGT TTCCTGAGCA TTGCCGAACC GCGCACGCCC 
GAGTTGAGCA GCGTGGTGCG GGCCATGAAC AGCATGGTGG AGCGGCTCAA GGCCATGTTC 
AGCGAAGAGG CGGCTCGCCT CGAAACCTTG CGTCAAAAAG TTAACCTCGA CGCGCTGTCT 
GGCTTGTCGG GTCGCGATCA TTTTTTATCC CAAATGCGCG AGTTGGTGAC CGGCGAATCC 
TTCGGTGCCG AAGGCTCGCT GGTCATGGTG CGCCTGACCA GCTTGAACAC GCTCAACGCC 
CGGCTGGGTC ACCAGCGGGC CGACGCCCTG CTCAAGCAGT TGGGCCGCGT ACTCCAGGAC 
AGTTGCCAGG ATAGGCTCGG CCAACAGGCT GGACGCCTCA AGGGCGGCGA GTTTGCCGTG 
GTTTACCCCA CCACCGCCTC ACCCGGGGAG GCCGGCGCCG ATTTGCACCA GCGCCTGACC 
CAAAACTGGT TGCCCGACTG GGTGGCCGAC GTGCCCGACC TGTTCCAGGT CGGCGCCGTG 
CCCTACCACC GCGATCAAGA CGTTGGCGAT CTGCTCAGCC GTGCCGACGA AGCACTCGCC 
CGCGCCGAAG CCCAGGGTTC GAACAGCTGC TACGCCGGCG AGGCCGACAG TGGCAGCACG 
GCACGGCCCG CCGAGCAATG GCGCAACCTG TTGACCGACG CCGTCGCCGG CGGCAAGCTG 
CGGCTGGCTT TCTACCGTGT GGTCGGCAGC GCCAACCAGG CCGCCATCCA CCAGGAGGGC 
GTGATTCGCC TGCAGCTCGA CACGGCCGGC GCATTGTTAC CCGCAGGTGA CTTCATGCCC 
ATGGCCGCGC ACCTCAATCT CACGGCGCCC ATTGACCTGC AAGTTGTCAA GCTCGCCATT 
GAATACCTGC GCACCACGCC GGGCGACATC GCGATCAACC TGTCGGCCGA AACCATTGTC 
GACTTCAATT TTCGCCGCGA ACTGGCACTG CTGTTACAGG CCAACCCCGA CATGTGCAAA 
CGCCTGCTGT TTGAGGTGCC CGAGTACGGC GTGTTCAAAC AGTTCGATGC CTTTCGCGAC 
CTGGTGCACG CCGTCAAACC GCTGGGCTGC CGCGTCGGCA TCGAGTACTT CGGCCAGCGC 
TTTGCCGAAG GCGACAAGCT GGCCGACCTG GGCCTGGACT ACATCAAGGT CCACCCCAGC 
TACGTGCATG GCATCGCCAA CAACCCGGGC AACCAGGAGT TTCTTAAAGG CCTGTGCAGC 
GTGGCGCGCA ACTTTGGCAT CGTCGTCATC GCGCTCGGCG TCGAATCCGA GGCCGACCTG 
CCCCTGCTGG CCTCGCTCGG CTTTGACGGC ATGACGGGGC CGGGGGTCAA ATGA 

 

Protein sequence

MSLIKQLWIA IALVMTLAFG GSMVVSVLSA RHYLEQQLQV KNIDNANALA LSLSQLPKDP 
VMIELQVAAQ FDAGHYSVIR ITSPTGKTLV ERVFSGALTG VPHWFIALTP INAAPGQALV 
QDGWNQYGTL TLESQEQYAY QSLWDGTLKL LLWFVLGGLV TGAVGTLLIR IITRPLGEVV 
AQAQAIAERR FLSIAEPRTP ELSSVVRAMN SMVERLKAMF SEEAARLETL RQKVNLDALS 
GLSGRDHFLS QMRELVTGES FGAEGSLVMV RLTSLNTLNA RLGHQRADAL LKQLGRVLQD 
SCQDRLGQQA GRLKGGEFAV VYPTTASPGE AGADLHQRLT QNWLPDWVAD VPDLFQVGAV 
PYHRDQDVGD LLSRADEALA RAEAQGSNSC YAGEADSGST ARPAEQWRNL LTDAVAGGKL 
RLAFYRVVGS ANQAAIHQEG VIRLQLDTAG ALLPAGDFMP MAAHLNLTAP IDLQVVKLAI 
EYLRTTPGDI AINLSAETIV DFNFRRELAL LLQANPDMCK RLLFEVPEYG VFKQFDAFRD 
LVHAVKPLGC RVGIEYFGQR FAEGDKLADL GLDYIKVHPS YVHGIANNPG NQEFLKGLCS 
VARNFGIVVI ALGVESEADL PLLASLGFDG MTGPGVK