| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3762 |
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| Symbol | |
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| ID | 3961111 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4197041 |
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| End bp | 4198870 |
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| Gene Length | 1830 bp |
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| Protein Length | 609 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637918588 |
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| Product | Type I secretion outer membrane protein, TolC |
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| Protein accession | YP_524993 |
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| Protein GI | 89902522 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein
[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.789361 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTTGTA AAAGGACGCT GTCATTGCTG GCAGTTGCGG TTTTGTCAGG TTTGGGTGTG
CAGGCGCAGA GTCTGCCTGA ACCGCTGGTC AAAGCTGCGC GCAAGGCTGT GGTCAGTAAT
CCTGAGGTCC AGGCCCGCTG GAACGGCTTC AAGGCGGCTG GCAATGAGCG TGATGTTGCG
CGTGGCGGTT TTTTGCCGCA ACTGGACCTG ACTGCCTCGA CCGGGCGTGA AGACCGCGAC
TCGCCGGTAG TCGGCAACGT CGGTTCCTAC AACGTCAATG CCGCGCGGCT GACGCTCAAT
CAGATGTTGT TCGACGGTAT GTTCACCGCC AATGAAGCCA GGCGCCTGGG CTACGCCAAG
CTGACGCGCT ACTACGAACT GACCGAAGCC TCCGAGACAG CTGCCCTGGA GGCCGTTAAA
GCCTATGCTG ATGTGGCGCG CTATCGTGAG TTGGTGGATG TGGCCACGCA AAATTATGTG
GAGCACAAGC AAACCACCCT GCAAGTGGAA GAGCGGGCCA ACTCCGGGGT GGGTCGTCGT
GTTGACGTCG AGCAAGCCAA TGGTCGGCTG GCACTGGCCG AGTCCAATTT GTTGACCGAG
TTGACCAACC TGCACGACGT GAGCGCACGC TATCTGCGCG TGGTGGGGGA AAAACCGCCT
GCCAACCTGC CGCCTTTGCC CGAGCCGTTC AAGCTGGGCA CTTTGCCCGC GTCCACAGAG
GCCTTGATGC TCGACGGTCT GCAGGGTAGC CCCACATTGA ATGCCGCCAT TGAAAACGTG
CGTGCCTCCA AAATGGGCAT CGAATCACGC AAGGCGGCTT ACATGCCGCG CGTGGACTTT
CGTGCTTACG CCAGCCACGA CAACAACACC GGCGGCGTTA GCGGTGGCAC GCGTGTGAAT
GGCGTTGAAT TGGTACTGAA CTACAACCTG TTCCGTGGCG GCGCCGACAA GGCCCGTGAG
CGGCAGGCGG TTGACCAGAA GGAGCAAGCG CGCGATCTGC AGGAAAAAGC CTGTCGTGAT
GTGCGCCAGA CCCTGTCGAT TGCCTACAGC GATGTGCGCA GTCTGAGCGA ACAACAGCGT
TACATGGATC AGCACCGTCT GTCGACGGAG AAATCGCGCG AGGCCTACCG CCAGCAGTTT
GATATCGGGC AGCGCACCCT GCTGGATTTA CTGGACAGTC AGAATGAGTA TTTCGAGGCA
ACGCGCTCTT ACATCAATGC GCGCTACAAC CAGGTCGCGG CGCAGGCGCG TACCTTGGCT
GGCATGGGCC AGTTGGTGAC GGCGCTGGGT GTCAATCGTG AAGATATGCC GAGCTTGCAG
GATGCGGGCC AGGACCGCAG CGGCATTGAC CCTGCCGAGT TGTGCCCGCT CGAAGAGTCC
ATGGTCGATA CCCTGGACAA AATCAAGGCG GAAACCGTGA TTCCATCGCG TGCGCGCGCA
GTGGCTCCAG TCGTGCAGAA GCCAGCACCG ACCAAAGTCA GTTTGTCGGC CGATACGCTG
TTTGACTCTG GCAAATCAAA CCTCAAGGCT GAGGGCCTGC GTAGTCTTGA CAGCCTGCTG
GCACGCATCA AGGGTGTCCA GCTCGATGTG GTGATTGCCG TCGGTCACAC TGATTCGGTG
GGTAGCGAAG AGTTCAACAA CCGCCTGTCG CTGGCACGCG CCGAGTCGGT CAGGGCCTAT
CTGGTCGGCA AAGGAGTTGA TGTCAAACGT GTCCGGGCTG TTGGCAAAGG CGAAAGTCAA
CCCATTGCCG ACAATGCCAC CGAGGCTGGC CACGCCAAGA ACCGCCGCGT GGATGTCGAG
GCGCTGGAAG CAACTATCCC CTCCAAATGA
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| Protein sequence | MGCKRTLSLL AVAVLSGLGV QAQSLPEPLV KAARKAVVSN PEVQARWNGF KAAGNERDVA
RGGFLPQLDL TASTGREDRD SPVVGNVGSY NVNAARLTLN QMLFDGMFTA NEARRLGYAK
LTRYYELTEA SETAALEAVK AYADVARYRE LVDVATQNYV EHKQTTLQVE ERANSGVGRR
VDVEQANGRL ALAESNLLTE LTNLHDVSAR YLRVVGEKPP ANLPPLPEPF KLGTLPASTE
ALMLDGLQGS PTLNAAIENV RASKMGIESR KAAYMPRVDF RAYASHDNNT GGVSGGTRVN
GVELVLNYNL FRGGADKARE RQAVDQKEQA RDLQEKACRD VRQTLSIAYS DVRSLSEQQR
YMDQHRLSTE KSREAYRQQF DIGQRTLLDL LDSQNEYFEA TRSYINARYN QVAAQARTLA
GMGQLVTALG VNREDMPSLQ DAGQDRSGID PAELCPLEES MVDTLDKIKA ETVIPSRARA
VAPVVQKPAP TKVSLSADTL FDSGKSNLKA EGLRSLDSLL ARIKGVQLDV VIAVGHTDSV
GSEEFNNRLS LARAESVRAY LVGKGVDVKR VRAVGKGESQ PIADNATEAG HAKNRRVDVE
ALEATIPSK
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