| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3710 |
|---|
| Symbol | |
|---|
| ID | 3963244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 4143189 |
|---|
| End bp | 4143905 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637918536 |
|---|
| Product | sigma 28 (flagella/sporulation) |
|---|
| Protein accession | YP_524941 |
|---|
| Protein GI | 89902470 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
|---|
| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACACCG CCAAGGGGCA ATTGGACCGC AACGCCATGA TCCGGCAGTA CCAGCCGCTG
GTGCGGCGCC TGGCCCACCA CATGATGGCC AAATTGCCGG CCAACGTCGA AGTCGATGAT
CTGATCCAGG TCGGGCTGAT CGGCTTGTCG GAGGCCCTGA CCCGCTACGA GGCCGCGCAG
GGTGTTCAAT TTGAAACCTT TGCCACGCAG CGCATTCGCG GCGCCATGCT CGACGAGCTG
CGCGGCAACG ACTGGATGTC GCGCGGCTCG CGCAAGAGCC AGAAAGATAT CGAACAGGCG
CTGCGCCGGC TGGAGCACAA GCTCGGGCGC ACACCGCTGG AGAGTGAAAT TGCCGCCGAC
CTGGGCTTGA GTCTGGTCGA CTACCAGACG CTGCTGGGTA AAGTGCGTGG CACCCAACTG
GTGTACCTGG AAGACATGGC GCGTGGCAAC GACGAGGAAG ACAGTTTTCT GGATCGCCAC
GTCGGTGACA GCGACGCCGA CCCGATGAAC GTGCTGCGCG ACCAGCGCTT GCGCCAGGCA
CTGGTGGCCG CCATCAAGAA CCTGCCCGAG CGCGAGCAGT TCATCATGAG CATGTACTAC
GAGCAGGACA TGAATCTGAA AGAGATCGCG GCCGTGCTGG ATGTCACCGA GTCGCGCATT
TGCCAGTTGC ACAGTCAGTC GATCGCGCGC TTGCGCGCCA AGATGCGGGC CCATTGA
|
|---|
| Protein sequence | MYTAKGQLDR NAMIRQYQPL VRRLAHHMMA KLPANVEVDD LIQVGLIGLS EALTRYEAAQ
GVQFETFATQ RIRGAMLDEL RGNDWMSRGS RKSQKDIEQA LRRLEHKLGR TPLESEIAAD
LGLSLVDYQT LLGKVRGTQL VYLEDMARGN DEEDSFLDRH VGDSDADPMN VLRDQRLRQA
LVAAIKNLPE REQFIMSMYY EQDMNLKEIA AVLDVTESRI CQLHSQSIAR LRAKMRAH
|
|---|
| |