| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3671 |
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| Symbol | |
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| ID | 3964039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4090858 |
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| End bp | 4092591 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637918487 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_524902 |
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| Protein GI | 89902431 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00462233 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTTGC GTTTTAGCGC GTTGGCAGTG GCGGTAGCCT GCAGCGCGAT GTCCAGTCAA
GGTTGGGCTG ATGAGGCTGC GGCCAAGAAG TGGATTGACG CTGAGTTTCA GCCGTCCACC
CTGTCCAAAG ACAAACAGGC TGCTGAAATG AAATGGTTTA TCGACGCCGC CGCCAAACTC
AAAGCCAAAG GTGTCACTGA AATCAGCGCC GTGTCGGAAA CCCTGACCGT GCATGAATAT
GAATCGAAGA CCCTGGCCAA GGCATTCGAG GAAATCACCG GCATCAAGGT CAAGCACGAG
ATCATCCAGG AGGGTGACGT GGTCGAGAAG CTGCAGACCT CCATGCAGTC GGGTAAGAGC
ATCTATGACG GCTGGATTTC GGACTCGGAC CTGATTGGCA CGCATTATCG CTACGGAAAA
ATCCTGTCGC TGACCGACTA CATGGCGGGC ACTGGCAAGG AGTACACCAA CCCCGGTCTG
GACCTGAAAG ACTTCATCGG TACCAGCTTC ACCACGGCGC CGGACCATAA GCTGTATCAA
CTGCCAACCC AGCAGTTCGC CAATCTGTAT TGGTTCCGCG CCGATCTGTT TGCCAAAAAA
GATTTGCAGG ACAAGTTCAA GGCCAAATAC GGTTATGACC TGGGCGTGCC ACTGAATTGG
AGCGCCTACG AAGACATTGC CGCATTCTTC AGCGAAGATG TCAAAACCAT CGACGGCAAG
CCGATTTATG GTCACATGGA CTACGGCAAA AAGGATCCTT CTTTGGGTTG GCGCTTCACG
GACGCCTGGC TATCCATGGC CGGCGCCGCT GACAAAGGCA TTCCCAACGG CCTGCCGGTC
GATGAATGGG GCATTCGCGT CGCTGATGAC AAGTGCACGC CGGTCGGTGC ATCCGTTTCT
CGCGGTGGTG CCACCAACTC ACCGGCCGCC GTCTATGCGC TCACCAAGTA CGTGGACTGG
ATGAAAAAGT ACGCACCCAA GGAAGCCACT GGCATGACCT TCGGCGAAGC CGGCCCCGTG
CCCGCCCAAG GCCAGATAGC GCAGCAGATT TTCTGGTACA CGGCTTTCAC GGCTGACATG
GTCAAACCGG GCTTGCCGGT GGTGAATGCT GACGGTACGC CAAAGTGGCG CATGGCCCCT
GGCCCGAACG GCCCGTACTG GAAGGAAGGC ATGCAAAACG GCTACCAGGA CGTTGGCTCG
TGGACATTCT TCAAGGATCA TGATGCCAAC AAGGTGGCGG CTGCCTGGCT CTACGCGCAG
TTTGTGACCA GCAAGACCGT CTCGCTCAAG AAGTCGATTG TGGGCACCAC GTTTATCCGT
GACAGTGACA TTCGCAGTGA TTACTTCACC AAGAACGCGG CCAAGTACGG CGGCCTGATT
GAGTTTTATC GCAGTCCGGC GCGCGTGGCC TGGACACCAA CCGGGACCAA CGTGCCGGAC
TACCCGAAGC TGGCACAACT GTTCTGGAAG AATGTGGCCG TGGCCGTAAC CGGCGAGAAG
ACGCCGCAGG CTGCCATGGA CAACCTGGCT GAGGAAATGG ACCAGGTGAT GGGCCGTCTG
GAGCGCGCTG GCATGGCGCG CTGCGCCCCC AAACTGAATC CGAAAATTGA CCCCAACAAG
TGGCTAAGCG ACAAGGGCGC ACCCTGGAAG AAATTGGCCA ACGAAAAGCC CAAGGGTGAA
ACCATTGCCT ATGACACGTT GTTGACGGCC TGGAAGAACG GCAAGGTCCG TTAA
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| Protein sequence | MKLRFSALAV AVACSAMSSQ GWADEAAAKK WIDAEFQPST LSKDKQAAEM KWFIDAAAKL
KAKGVTEISA VSETLTVHEY ESKTLAKAFE EITGIKVKHE IIQEGDVVEK LQTSMQSGKS
IYDGWISDSD LIGTHYRYGK ILSLTDYMAG TGKEYTNPGL DLKDFIGTSF TTAPDHKLYQ
LPTQQFANLY WFRADLFAKK DLQDKFKAKY GYDLGVPLNW SAYEDIAAFF SEDVKTIDGK
PIYGHMDYGK KDPSLGWRFT DAWLSMAGAA DKGIPNGLPV DEWGIRVADD KCTPVGASVS
RGGATNSPAA VYALTKYVDW MKKYAPKEAT GMTFGEAGPV PAQGQIAQQI FWYTAFTADM
VKPGLPVVNA DGTPKWRMAP GPNGPYWKEG MQNGYQDVGS WTFFKDHDAN KVAAAWLYAQ
FVTSKTVSLK KSIVGTTFIR DSDIRSDYFT KNAAKYGGLI EFYRSPARVA WTPTGTNVPD
YPKLAQLFWK NVAVAVTGEK TPQAAMDNLA EEMDQVMGRL ERAGMARCAP KLNPKIDPNK
WLSDKGAPWK KLANEKPKGE TIAYDTLLTA WKNGKVR
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