| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3526 |
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| Symbol | |
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| ID | 3960393 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3921900 |
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| End bp | 3923897 |
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| Gene Length | 1998 bp |
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| Protein Length | 665 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637918342 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_524762 |
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| Protein GI | 89902291 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities
[COG3320] Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.309759 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGTATT TTGTTACCGG TGCCACCGGG TTCATTGGCA AGCGGCTCGT CAAAAAACTT
CTTGAGCGCA AGGGCTCGGT GGTGCACTTC TTGATTCGCC AGGAGAGTGA AGGCAAGGTG
GCGGGTCTGC GCAAGTACTG GGGTGCCGGC GCCGCGCGGG TGGTGCCTGT GTTCGGCGAC
CTGACGGCCA AAAAGCTGGG CGTCTCTGCC GATGCCATCA AACAAATCAA AGGTCAGATT
GACCATTTCT ACCATCTGGC TGCCGTCTAT GACCTGGGGG CTGATGAAGC CAGCCAGATT
GCCGTCAACA TTGAGGGAAC CCGCAACACG GTGGAACTGG CTGCCGCCAT TCAGGCCAGG
CACTTTCACC ATGTGAGCTC GATCGCGGCG GCTGGGTTGT ACGAGGGCGT GTTCCGCGAG
GACATGTTTG AGGAGGCCGA GAACTACGAG CACCCTTATT TCATGACCAA GCATGAAAGT
GAAAAAATTG TGCGCCATGA GTGCAAGCTG CCCTGGTCAG TGTACCGGCC AGCCATGGTG
GTGGGCGATA GCAGTACCGG TGAGATGGAC AAGATTGACG GACCCTACTA CTTCTTCAAG
TTGATTCAGC GCATGCGCCA GGTGCTGCCG CCCTGGATGC CGTCGGTCGG ACTGGAAGGT
GGACGCATCA ATATTGTGCC GGTGGACTTT GTGGTGAACG CACTGGACGT CATCAGTCAC
CAAAAGGGAA TCACGAAGAA GTGCTTCCAC CTGGTGGATC CGGTGGGCTA CCGCGTGGGC
GACGTGCTCG ACATTTTCAG TCGCGCCGCG CACGCGCCCA AGATGAATTT GTTTATCAAT
GCCGCTCTGC TCGGGTTCAT TCCTCGCAGT GTCACCAAGG GTCTGATGGC GCTGGCGCCG
GTGCGCCGGG TGCGCCAGGC CATCATGAAA GACCTGGGCC TGCCCGAGGA CATGCTCACG
TTTGTGAACT ACCCCACGCG GTTTGACTGC CGCGACACGC TCGCAGCGCT CAAAGGCACG
GGGGTGGCCT GCCCCAACCT GAAGGATTAC GCCTGGCGCT TGTGGGATTA CTGGGAGCGT
CATCTTGACC CCGCTCTGCA TATTGACCAC ACCCTGCGCG GCACTGTGGC AGGCAAAGTG
GTCCTGATCA CCGGTGGTTC ATCGGGTATC GGCCTGGCGA CCGCTCACAA ATTTGCGGAG
GCTGGTGCCA TTACCGTCAT CTGCGGTCGT GATGTCGACA AGCTCGAAGA AGCCTGCAAG
GAGGCCAAAG CCAAAGGCTA CAGTTTCATC GCCTACCCGG CGGATATTGC CGACATGGCG
GACTGCGACC GGTTCATCAA ACAGTTGATT GATGACCATG GCGGCGTGGA TTTCCTGATC
AACAACGCCG GCCGCTCCAT TCGCCGCGCC ATTGAGTCCA GCTACGATCG TTTTCATGAC
TTTGAGCGCA CCATGCAGCT CAATTATTTT GGCTGCCTGC GCGTCACCAT GGGACTGCTG
CCGGGTATGG TGGCCAAACA CAAAGGTCAT GTGGTCAATA TCAGCTCCAT CGGCGTGCTC
ACCAACGCGC CGCGTTTCAG CGCCTATGTG GCCTCCAAGG CCGCCCTGGA AGCCTGGGCC
CGCTGCGCAT CGAGCGAGTT TGCCGATCAG GGCGTCAGCT TTACCACCAT CAACATGCCA
TTGGTGCGCA CCCCCATGAT CGCGCCGACC GGGCTGTACA ACAACGTGCC CACGCTGGCG
CCCGAAGAGG CCGCCGACAT GGTTGCCGAA GCCTGTATTT TCAAACCAGT GCGCATTGCC
ACCCGGCTGG GCATTACGGG TCAGGTTTTG CATGCCGTGT TGCCGCGGGT GGCGCAGATT
GCCATGAATA CAGCCTTCCG GATGTTCCCG GACTCGGGCG CCGCCAAGGG CGCGAAGCCG
GGCGATAAAG TGGTGAAACA ACATCTGTCG CCAGAAGCAG TCGCGATGCA GCAGATGATG
CGGGGGATTC ATTTCTGA
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| Protein sequence | MQYFVTGATG FIGKRLVKKL LERKGSVVHF LIRQESEGKV AGLRKYWGAG AARVVPVFGD
LTAKKLGVSA DAIKQIKGQI DHFYHLAAVY DLGADEASQI AVNIEGTRNT VELAAAIQAR
HFHHVSSIAA AGLYEGVFRE DMFEEAENYE HPYFMTKHES EKIVRHECKL PWSVYRPAMV
VGDSSTGEMD KIDGPYYFFK LIQRMRQVLP PWMPSVGLEG GRINIVPVDF VVNALDVISH
QKGITKKCFH LVDPVGYRVG DVLDIFSRAA HAPKMNLFIN AALLGFIPRS VTKGLMALAP
VRRVRQAIMK DLGLPEDMLT FVNYPTRFDC RDTLAALKGT GVACPNLKDY AWRLWDYWER
HLDPALHIDH TLRGTVAGKV VLITGGSSGI GLATAHKFAE AGAITVICGR DVDKLEEACK
EAKAKGYSFI AYPADIADMA DCDRFIKQLI DDHGGVDFLI NNAGRSIRRA IESSYDRFHD
FERTMQLNYF GCLRVTMGLL PGMVAKHKGH VVNISSIGVL TNAPRFSAYV ASKAALEAWA
RCASSEFADQ GVSFTTINMP LVRTPMIAPT GLYNNVPTLA PEEAADMVAE ACIFKPVRIA
TRLGITGQVL HAVLPRVAQI AMNTAFRMFP DSGAAKGAKP GDKVVKQHLS PEAVAMQQMM
RGIHF
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