Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_3504 |
Symbol | |
ID | 3963354 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 3895881 |
End bp | 3897059 |
Gene Length | 1179 bp |
Protein Length | 392 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637918320 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_524740 |
Protein GI | 89902269 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0407454 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAATCA AAGCGACAGT GGTACTGGCT GCACTGACCC TGGCAAGCAC CCTTGCCACG GCTCAACAGG GCGTCAGCCC GACCGAGATC ACGCTCGGCT CGATCCAGGA TTTATCCGGC CCACTGGCTG GCTTTGGCAA GCAGGCGCGC CTGGGCATGC TGCTGGCCGT GGACGAGATC AACGAGCAAG GCGGGGTCAG TGGCCGCAAG CTCAAGCTGC TGGTGGAAGA CTCGGGCTAT GACCCCAAGA AAGCCGTGCT GGCAGCACAG AAACTGGTAA ATCAGGACAA GATTTTCATG ATGGTCGGCC ACATTGGCAC GGCGCAGAAC ATGGCGGCCA TGCCGGTCCA GTTCGACAAG AACGTGATCA ATTTTTTCCC GATCACGGCG GCGCGCGAAA TGTACGAACC TTTCCACAAG CTGAAGTACT CGTTTGCCGC CACCTACTAT GACCAGATGC GGCGCGCCGT GCCCCAAATG GTCAAGGACA AAGGTATCAA GAAAGTCTGC ACCATTTACC AGGACGATGA TTTCGGCCTG GAAGTGCTGC GGGGCGGCGA AGCTGGCCTC AAAACCATCA ACATGGATTT CACCGAAAAG ACGTCCTTCA AGCGCGGTGC GACCGACTTT TCGTCCCAGG TGGCGAAGAT GAAAGCGGCA GCTTGTGAGA TGGTGGTGTT GGGCACCATC ATTCGCGAGA CCATCGGCAC CATTGGAGAA TCCCGCAAGA CCGGCTTCAA CCCCATCTTC CTGGGATCCA GCGCCGCCTA TACCGACCTG ATCCACAAAC TCGGCGGCAA GGCCATGGAC GGGCTGTATG CAACGATGAC CGTGCAAAAC CCTTACACGG ATGAGCAGTC GCCACAAATA CGTTTCTGGG CCAACAAGTA CAAAACCAAA TTCAATGAAG ACCCGAGTGT GTTCTCTGTG TATGGCTACC TCATCATCAA CACCTTTGCC AACGTGGCGA GCAAGGCTGG CAAAAACCTG AGCACCGACA GCTTCATCAA GGTCATGGAC ACCTTGACCG TTCCACCCGA TATCTTTGGC AGCACCACCA TCACTTTCTC TCCCACCAAA CGCCTGGGCA GCGACGCGTC GCGTCTGTCG CAGATTCAGG ACAGCAAGTG GAAAGTGGTT GGACCCTATA TCACTGATGG CGGGCCGGCC AAGAAATAG
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Protein sequence | MKIKATVVLA ALTLASTLAT AQQGVSPTEI TLGSIQDLSG PLAGFGKQAR LGMLLAVDEI NEQGGVSGRK LKLLVEDSGY DPKKAVLAAQ KLVNQDKIFM MVGHIGTAQN MAAMPVQFDK NVINFFPITA AREMYEPFHK LKYSFAATYY DQMRRAVPQM VKDKGIKKVC TIYQDDDFGL EVLRGGEAGL KTINMDFTEK TSFKRGATDF SSQVAKMKAA ACEMVVLGTI IRETIGTIGE SRKTGFNPIF LGSSAAYTDL IHKLGGKAMD GLYATMTVQN PYTDEQSPQI RFWANKYKTK FNEDPSVFSV YGYLIINTFA NVASKAGKNL STDSFIKVMD TLTVPPDIFG STTITFSPTK RLGSDASRLS QIQDSKWKVV GPYITDGGPA KK
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