Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_3444 |
Symbol | dapF |
ID | 3960504 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 3833652 |
End bp | 3834527 |
Gene Length | 876 bp |
Protein Length | 291 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637918264 |
Product | diaminopimelate epimerase |
Protein accession | YP_524684 |
Protein GI | 89902213 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGAATCC CCTTTACCAA AATGCAAGGT GCCGGCAACG ATTTTGTGGT GCTTGATGAG ACTCAAGGCC GCTTTGGTTT GAGCACCGCG CACTACCGCT TGCTGGCGGA TCGCCACTTT GGCGTCGGTG CCGACCAGAT TTTGACGGTG CGCCCTTCTC CGGCGCCAGG CATTGATTTT GAGTACCTCA TTCACAACGC CGATGGCGCC GAGGTCGAGC AGTGCGGCAA CGGGGCGCGC TGCTTTGCGC GCTTCGTGCG GGACCAGGGC CTGACAGCCA AGGACGCGAT CCGGGTGCAG ACCCGAGGCG GCGTGATTGA GCCGCAACTT AATCCCGATG GCCGCGTCAC GGTGAACATG GGCGCGCCGG TGTTTGAACT GGCCGAGATC CCGTTTGATG CCACCGGTCT GCAGCCGCAA ACTTCGGGTT TATGGAAAAA ATGGCCTCTA GCCCTCGTGG ATTCTGGGCA TGCAACTACT GTTTATGTAG CAGTTGTGTC GATGGGCAAT CCGCATGCGG TGCAGGTCGT GGACGATGTC GACACGGCGC CGGTGCGGTT GCAAGGCCCT TTGATTGAAC ACCATGCCAG TTTCCCGAAG CGGGTCAACG CCGGTTTCAT GCAGATCGTG GACCGCAGCC ACATCCGGCT GCGCGTTTAC GAGCGCGGCA CCGGCGAAAC CCTGGCCTGC GGCTCCGGCG CCTGCGCGGC GGTGGTGGCC GGCATCCGGC TCGGGCTGCT CGACGACACG GTGCATGTCC AGACCCACGG CGGCACATTG ACCATTTCCT GGGCGGGCGC CGCAGCGCCG GTGCTGATGA CCGGGCCCGC CACCCCAGTT TTTCACGGTG AAATCAACCT ACCCGACAAC CTATGA
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Protein sequence | MRIPFTKMQG AGNDFVVLDE TQGRFGLSTA HYRLLADRHF GVGADQILTV RPSPAPGIDF EYLIHNADGA EVEQCGNGAR CFARFVRDQG LTAKDAIRVQ TRGGVIEPQL NPDGRVTVNM GAPVFELAEI PFDATGLQPQ TSGLWKKWPL ALVDSGHATT VYVAVVSMGN PHAVQVVDDV DTAPVRLQGP LIEHHASFPK RVNAGFMQIV DRSHIRLRVY ERGTGETLAC GSGACAAVVA GIRLGLLDDT VHVQTHGGTL TISWAGAAAP VLMTGPATPV FHGEINLPDN L
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