| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3429 |
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| Symbol | |
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| ID | 3960489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3816125 |
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| End bp | 3817567 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637918249 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
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| Protein accession | YP_524669 |
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| Protein GI | 89902198 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.245841 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGACCT TGCAACAGGC CGCATCCTGG CTCGGCAACG CACGCCTGGT CAACGTGACC
GGTACAGACG GCGCGGACGT CCTGATTGAA CGCGTGCACA CCGACACCCG CACGCTGGCG
CCGGGTGACC TGTTCGTGGC TTTGCGTGGT GAGCATTTTG ACGCCCATGA TTTTCTGGCC
CAGGCCAAGG CGCAAGGTGC GGTGGCGGCC GTTTGCCAAG CCAGCGACGC CGGCGACGTC
GAGGCCAAAT TGCGCGCTGT TGGCCTGCCC GGCTTGCTGG TGCCCGACAC CAAACTGGCG
CTGGCGCAAC TGGCCACCCA GTGGCGCGCC CAGTTCACGC TGCCGCTGAT CGCCGTCACC
GGCAGCAACG GCAAGACCAC GGTGACGCAG ATGATTGCCG CCATCCTGCG CGCCTACAAG
CCGCAGGCGT ATCTATCCAC GCAAGGCAAT TTGAACAACG ACATCGGCGT GCCGCTCACC
GTGCTGCGTT TGCGTCGCCA GCACGAAATC GCGGTGGTTG AGCTGGGCAT GAACCATCCC
GGTGAAATTG CGACGCTGGC TGCCATTGCC CAACCCACCG TGGCGCTGGT CAACAACGCG
CAGCGCGAGC ACCTCGAATT CATGGCCACC GTCGAGCGGG TGGCGCAGGA AAACGGCTCG
GTCATTGACG CGCTGCCGGC GCACGGCGTG GCGGTGTTCC CGGCCGACGA CACCTATAGC
CCGCTGTGGG CGGACAAGGC CGGGTCGCGC GTGGTCATGC GGTTTGGCAG CGCCGCCGAT
GGGGCTGGCG CGGCGCAGGT GCGTTGTCTG CAAGCCGACT GGTCCGGCGT CGCCTGGCAG
GTCGCGGTCA GCACGCCTGC GGGCGCCTTG CAGTACACCT TGCCGATTGC GGGCTTGCAC
AACGTCAAGA ACTCATTGGC GGCGGTGGCA TGTACCTTGG CGGCTGGTGT CCCTCTTAAG
CACATTGCCC GAGGCCTGAG TGCCTTTGAG CCGGTCAAGG GACGCTCGCG CGCCCTGCTG
ATCCAGATTG GCGCGCGCCA GATCACGCTG GTGGACGACA GCTACAACGC CAACCCGGAT
TCGGTGCGTG CCGCCATTGA CGTGCTGGCC AGTTTGCCGG GGCCACGCTT GCTGGTGCTG
GGCGACATGG GTGAAGTGGG GGACCAGGGA CCGCAGTTCC ATGCCGAGGC CGGCCAACAT
GCCCGTGCGC TGGGCGTCGA GTCCTTGTTC ACGCTGGGTG AGTTGTCAGC CGCTGCCGCG
ACCAGTTTCG GCGCCGGCCG CCATTTTGCC GACAACCAGT CGCTGCAGGC GGCGGTGCTG
GCCGAACTGC CGCGCATCGG CAGCGTGCTG GTCAAAGGCT CACGTTTCAT GAAGATGGAA
CGGGTGGTCG AGGCCGTTCT TCATCAGACC CAACCAGACA AGGATGCCGA TCATGCTGCC
TAG
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| Protein sequence | MMTLQQAASW LGNARLVNVT GTDGADVLIE RVHTDTRTLA PGDLFVALRG EHFDAHDFLA
QAKAQGAVAA VCQASDAGDV EAKLRAVGLP GLLVPDTKLA LAQLATQWRA QFTLPLIAVT
GSNGKTTVTQ MIAAILRAYK PQAYLSTQGN LNNDIGVPLT VLRLRRQHEI AVVELGMNHP
GEIATLAAIA QPTVALVNNA QREHLEFMAT VERVAQENGS VIDALPAHGV AVFPADDTYS
PLWADKAGSR VVMRFGSAAD GAGAAQVRCL QADWSGVAWQ VAVSTPAGAL QYTLPIAGLH
NVKNSLAAVA CTLAAGVPLK HIARGLSAFE PVKGRSRALL IQIGARQITL VDDSYNANPD
SVRAAIDVLA SLPGPRLLVL GDMGEVGDQG PQFHAEAGQH ARALGVESLF TLGELSAAAA
TSFGAGRHFA DNQSLQAAVL AELPRIGSVL VKGSRFMKME RVVEAVLHQT QPDKDADHAA
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