| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3423 |
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| Symbol | |
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| ID | 3963349 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3807928 |
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| End bp | 3808968 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637918243 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_524663 |
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| Protein GI | 89902192 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.206359 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCAAA TTGGCATAAA TGACGGCGCG AGCCAGCAGC CCGCCGGGAC GACCCTGGGC
GGCGTGGCGG CACGCCTGGG CAAGGTGGCG GTGCTGATGG GCGGCGCCTC GGCAGAGCGT
GAGGTGTCGC TGATGTCCGG GCAGGGCGTG CTGCAGGCGC TGATTTCGCA AGGGGTTGAT
GCCCATGCGT TTGACCCAGC CGAGCGCGAT CTGGCCGAGC TCAAGGTTGA GGGTTTTTCA
CATTGTTTTA TTGCCTTGCA CGGCCGCTTT GGTGAAGACG GCACGGTGCA GGGTGCGCTT
GAACTGCTCG GCATCCCGTA CACGGGCTCC GGCGTCATGG CCTCCAGCAT TGCCATCGAC
AAGGTCATGA CCAAGCGCAT CTGGCGCAGC GAGGGACTGC CGACGCCCGA GTGGCGGCAG
GTGGACAGTG CAGCGGCCAC GAGCGAAGCC TTCGCCGCGC TGGGCAGCCC GATGATTGTG
AAGCCCGACC GGGAAGGCTC CACCATCGGC CTGACCAAAG TCACGCAAAT AGAGCAGTGC
GGTGCAGCCT ATGCCCTGGC CGCCCGGCAT GACGCCATGG TGCTGTGTGA GCAGTTTGTC
AAAGGTGATG AAGTGACGAT TCCCCTGCTC GGGTCGGGCG CTGGCGCCCA CGCGCTGCCG
GTGATCCGCA TCGTGGCGCC GGACGGCAAC TACGACTACC AGAACAAGTA CTTCACCGAC
ACCACGCAAT ACCTGGTGCC CGCCAACCTG CCGGCAGGCG AAGAAGCCCA CATTCAACAA
CTGGCGCTCA AGGCCTACCA GGTGCTGGGA TGCCGGGGCT GGGCCCGCGT TGACGTGATG
ATCGACGCCC GCACACGCGC GCCCTTTTTG CTGGAAATCA ACACCTCGCC CGGCATGACG
CCGCACTCAC TGGTGCCCAT GGCGGCCAAG GCCGCCGGTG TCAGCTACCC GGCGCTGTGC
CTGGAGGTGT TGCGCCATGC CACGCTGGAC TATGCCGCCG CCGGTGGCGA TGCCCAGCAA
CCCTCCACGG AGCCTGCATG A
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| Protein sequence | MSQIGINDGA SQQPAGTTLG GVAARLGKVA VLMGGASAER EVSLMSGQGV LQALISQGVD
AHAFDPAERD LAELKVEGFS HCFIALHGRF GEDGTVQGAL ELLGIPYTGS GVMASSIAID
KVMTKRIWRS EGLPTPEWRQ VDSAAATSEA FAALGSPMIV KPDREGSTIG LTKVTQIEQC
GAAYALAARH DAMVLCEQFV KGDEVTIPLL GSGAGAHALP VIRIVAPDGN YDYQNKYFTD
TTQYLVPANL PAGEEAHIQQ LALKAYQVLG CRGWARVDVM IDARTRAPFL LEINTSPGMT
PHSLVPMAAK AAGVSYPALC LEVLRHATLD YAAAGGDAQQ PSTEPA
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