| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3391 |
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| Symbol | |
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| ID | 3962175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 3767944 |
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| End bp | 3771849 |
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| Gene Length | 3906 bp |
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| Protein Length | 1301 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637918211 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_524631 |
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| Protein GI | 89902160 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2206] HD-GYP domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00277] uncharacterized domain HDIG |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0258089 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCTG GTATGGCGGT GCACAGATTC CTGTCTCAGG GAAATCTGCT GCTGTCCATT
GTTTTTGCTG TCTTGATCAT TTTTCTCGCG CTCCCCCATT CTTTTGCTGA ATCAGCCAAT
CAGAATAAAC TCGTTTTTCT GGGCAACAAG AATATAGCCC CGGTGGTCTA CCAAAATAAT
ATGGTCCCGG CAGGCGTTGT GGTGGACATC GTTCGTGCAC TTGAAAAATA CATGCCCCAG
CCGATTGAAA TTAAAACCAT GGATTGGCTG GAGGCGCAAG CGCTGGTGGC ACAAGGGAAA
GCCGATGCGC TTATTCAAAT AAACCCGACG CAGGAGCGTC GGGAAATATA TGATTTTTCA
GATACCTTGC TTGAATCCCA GTTTTCAATT TTTACCACCA CCAACAGGGT TGGCATCTCG
GGAATGTCAA GCCTTCGCGG CCTGAGGGTT GGCGTGGAGG CGGGGGGCCT GCCTCAGCAG
TTATTGGGGA AAGACCCGCA AATTCTGCTC ACCATCATCC CAAATTTTAT CGAGGGATTT
AAACAGCTCA ATGCTGCCAC GGTGGATGCC GTGGTGGTGG ACTACCGGGT TGGGTCTTAT
ATCATTGCCG AAAACAAAAT ACAAAATATC AGGGTGACGG GTGAGCCTGT TGCATTTTCT
TATTCGTCCA TTGCGGTGAA GAAAGGAAAT GAGAAACTGC TCAGTGCCAT CAATAATGGC
TTGAAGAGTA TCAAAGCGGA TGGTAGTTAC CAAACTGTCA TCAATAACTG GAAGCCCAAA
GAGGTTGTGT TTCAGACCCG GGAACAGATC ACCCAAAGAA TCTACTACGT CTCGGTCATC
ACCTTATTCA TATTGTTCCT GATTGCAGCC ACATGGACAA TGACCTTGAA AAAACAGTTG
CTCAGAAGAA AGGCGGCGGA AGAGCGACTG GGAGAACAGT ATTCCACTTT GAGCAGCATC
ATCAACAGTG CCAATGCACT GATCTTTTCT TTGGACCGGC AGTACCGCTA CACCAGTTTC
AACCAGGGGC ATGCCGACGT CATGAAAGCG CTTTACGGGG CCCAGATCGA GCAAGGCCAC
AGTCTGCTGG ACTACATGAC CGTGCCGCAG GATCGGGAAA CCGCCCAGCA CAACATTGAT
CGGGCGATCG CCGGAGAGCA GGTTGTGGAG GAGTCGTATT CAGGAGATGA ACTTCGGTCG
CGGCAGTATT TCCAGGTCTC GCACAGCCCG ATCAAGAGTG GCGAAGATGT CATCGGTGTG
GCGGTGCTGG CCCAGGACAT GAGCGCCCGC AAGCGCTCGC AGCTAGCCCA GGAGTTGAAC
TCCCAACGCA TGCAAATGCT GCTGCAACTC AACCAGATGG CCGGGGCAAC GCTGAAAGAG
ATCGAGGATT TCACCTTGGA AGAAGCCGTA CGCTTGACCC AAAGCAAAAT CGGCTACCTG
GCGTTTGTTA ACGAAGATGA GAGCGTGCTG ACCATGCCCG CGTGGTCAAA ATTGGCCATG
GCAGAAGGCG TCATCACCGA GGAGCCGATC GTGTACCCGG TCGAAACCAC GGGGCTCTGG
GGCGAAGCGG TGCGCCAGCG CCGACCCGTC ATCACCAACG ATTACAACGC CGCCAACCCC
TTGAAAAATG ACTGGCCGCG GGGCTATGTC AACCTGAAAC GTCACATGAA TGTGCCCGTG
TTTGACGGCG CCAGAATCGT CATCGTGGCG GGCGTTGGCA ACAAGGTCGA GGCGTACGAC
GAAGGGGACG TACAGCAGTT GACCCTGATC ATGGAAGGCA TGTGGCGGCT GCTGGAGGGC
AAGCGCTCGC AGGAAACTCT GCATCGATTG AATCGCGAAC TGCGCGCCAT CAGCAGTTGC
AACCAGGCCT TGTTGCGCAC GCAGGACGAG CAGACCCTGC TCAACGACAT TTGCCACATT
GTTTGCGACG AGGCCGGCTA CCGCATGGCC TGGGTGGGCT ATGCCGAGCA CGATGCGGGC
AAGACCGTCC GTCCGGCGGC CTGGGGTGGT TTCGACAGCG GGTATATCGC CGACGCCAAA
TTGTCCTGGG CTGAGGACAC ACCGCGCGGG CAAGGTCCCG CCGGAGTCGC GATCCGAAGC
GCAGAGATCG TCTATTTTCA GGATCTGGCC AACGACCCAA GCATGGCCCC GTGGCGCGAG
AGCGCCTTGC AGCACGGCTA TCGTTCCGGC ATCGCCTTGC CCTTGAAAAA CGAAGGCGCA
GAAGTATTCG GCGTTCTGCT GATTTATTCG GCCGAGATCA ACGCCTTTAG CCCCGCCGAA
ATCCGGCTTC TGCAGGAGCT GTCGGGCGAT CTGGCGTTCG GCATCACGGT GCTGCGCGCC
CGCCTCGAAC GCACGCGAGC GGAAGAAGCG TTGAAGAACA TGGCGATGAA ATTCCGAACC
ATCTACGAAT CGACTTCCGA TGCCATCATG CTGATCGATG AACAAGGCAT CTTCGACTGC
AACGCGGCCA CGCTGCGGAT ATTCGCTTGC CAGGCACGGG ATGATCTGGT TGGCAAACAG
CCCTCCCAGC TGTCCCCGCC GACCCAGCCC GGTGGTGAAG AGTCGATGCA GCTGGCCAAT
GAATATATCG CTACGGCCTA CAGGAATGGC AGCCATCAGT TCGAATGGAC GCACCGTCGC
CTGGACGGTG CACAGTTTCC CGCCGACGTG TTGCTCACTG CCATGGAACT GGGCGGCAAG
CCGGTGCTGC AAGCCACGGT GCGCGACATC ACCCGGCGCA AGCAGGATGA ACTGGCGCTG
GCAAGAGCCA ACCGCGCCTT GCGCACCCTC AGCGCCTGCA ATGAGGCGCT GGTGCGCGCC
ACCAACGAAT CCGGGCTGCT TGATGCCATT TGTCGGCTGA TTGTGGAAAC CGGCGGCTAC
CGCATGGCGT GGGTGGGATT CCCCGAGCAG AACGCGGCGA AGACGGTGCG CCCGGCGGCC
CACTACGGTT ACGACGAAGG TTTTCTGGCC GAGGCCCCTA TCAGTTGGGC CGACATTGAG
CCTGGTCGTG GCCCGACCGG CACAGCCATT CGGACCGGCA CCGTCCAGGT CAATCAGAAC
TTCCTGCTCA ACCCGGCCTC GGCCCCGTGG GGAGATGAGG CACAGTCGCG CGGCTACCAG
TCCAACATTG CGCTGCCGCT CACCAGCGAA GCGGGCACCT TGGGTGTGCT GACCATTTTT
GCGGCGGCAC CCGATGCTTT CAACGAAACC GAAGTCATCC TGTTGAAGGA ACTCGCCAGC
GACCTGGCCT TCGGCATCGC CACCTTGCGC ACGCGGGCTG AACGCGACCG CATTGCCTAC
GAACACCAGC ACCATGAGGA CATACTGCGC CAGAGTCTGG AGGACTCCAT CAAGGCCATC
GCCGACACCG TGGAAATGCG CGACCCGTAC ACCGCTGGCC ATCAGCGGCG CGTGGGGCAA
CTGGCAGTCG CCATCGCGCG CGAACTGGGT TTGCCGGAAG ACACCATGCG AGGCATCGAA
CTCGCCGCCA GCATTCACGA CCTGGGAAAA ATCAGCATTC CGGCGGAAAT TCTCGCCAAG
CCCATCAAGC TGACGGCCAT CGAATACATG CTCCTGAAGA ATCACCCGCA AGCCGGCTTT
GACATTCTCA AAGACATCAG ATTCCCCTGG CCCATCGCCA CCATGGTGCT GCAACACCAT
GAACGCCTGG ACGGCTCGGG TTATCCGCAG GGACTCCAGG GCGAGCAAAT CCTGCTCGAG
TCGCGCATCA TGGCGGTCGC CGATGTGGTC GAGGCGATGG CCTCGCATCG CCCCTACCGG
GCGGCGCTGG GCGTTGATGC CGCGCTGGCG GAAATCGGGC GCGGCCGCGG TGTCATCTAT
GACACGCTGG CCGTTGATGC CTGCCTGCGG CTTTTCGCCG AGAAACGGTT TTCGTTTTCA
AGCTGA
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| Protein sequence | MKAGMAVHRF LSQGNLLLSI VFAVLIIFLA LPHSFAESAN QNKLVFLGNK NIAPVVYQNN
MVPAGVVVDI VRALEKYMPQ PIEIKTMDWL EAQALVAQGK ADALIQINPT QERREIYDFS
DTLLESQFSI FTTTNRVGIS GMSSLRGLRV GVEAGGLPQQ LLGKDPQILL TIIPNFIEGF
KQLNAATVDA VVVDYRVGSY IIAENKIQNI RVTGEPVAFS YSSIAVKKGN EKLLSAINNG
LKSIKADGSY QTVINNWKPK EVVFQTREQI TQRIYYVSVI TLFILFLIAA TWTMTLKKQL
LRRKAAEERL GEQYSTLSSI INSANALIFS LDRQYRYTSF NQGHADVMKA LYGAQIEQGH
SLLDYMTVPQ DRETAQHNID RAIAGEQVVE ESYSGDELRS RQYFQVSHSP IKSGEDVIGV
AVLAQDMSAR KRSQLAQELN SQRMQMLLQL NQMAGATLKE IEDFTLEEAV RLTQSKIGYL
AFVNEDESVL TMPAWSKLAM AEGVITEEPI VYPVETTGLW GEAVRQRRPV ITNDYNAANP
LKNDWPRGYV NLKRHMNVPV FDGARIVIVA GVGNKVEAYD EGDVQQLTLI MEGMWRLLEG
KRSQETLHRL NRELRAISSC NQALLRTQDE QTLLNDICHI VCDEAGYRMA WVGYAEHDAG
KTVRPAAWGG FDSGYIADAK LSWAEDTPRG QGPAGVAIRS AEIVYFQDLA NDPSMAPWRE
SALQHGYRSG IALPLKNEGA EVFGVLLIYS AEINAFSPAE IRLLQELSGD LAFGITVLRA
RLERTRAEEA LKNMAMKFRT IYESTSDAIM LIDEQGIFDC NAATLRIFAC QARDDLVGKQ
PSQLSPPTQP GGEESMQLAN EYIATAYRNG SHQFEWTHRR LDGAQFPADV LLTAMELGGK
PVLQATVRDI TRRKQDELAL ARANRALRTL SACNEALVRA TNESGLLDAI CRLIVETGGY
RMAWVGFPEQ NAAKTVRPAA HYGYDEGFLA EAPISWADIE PGRGPTGTAI RTGTVQVNQN
FLLNPASAPW GDEAQSRGYQ SNIALPLTSE AGTLGVLTIF AAAPDAFNET EVILLKELAS
DLAFGIATLR TRAERDRIAY EHQHHEDILR QSLEDSIKAI ADTVEMRDPY TAGHQRRVGQ
LAVAIARELG LPEDTMRGIE LAASIHDLGK ISIPAEILAK PIKLTAIEYM LLKNHPQAGF
DILKDIRFPW PIATMVLQHH ERLDGSGYPQ GLQGEQILLE SRIMAVADVV EAMASHRPYR
AALGVDAALA EIGRGRGVIY DTLAVDACLR LFAEKRFSFS S
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