| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3369 |
|---|
| Symbol | |
|---|
| ID | 3964232 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 3740696 |
|---|
| End bp | 3742168 |
|---|
| Gene Length | 1473 bp |
|---|
| Protein Length | 490 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637918189 |
|---|
| Product | peptidase U62, modulator of DNA gyrase |
|---|
| Protein accession | YP_524609 |
|---|
| Protein GI | 89902138 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0312] Predicted Zn-dependent proteases and their inactivated homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.355295 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCTCTC GCGAACCCAC TCTTGAACGC TTAGGCCTGG CCAAGTCCCT GCTGCTCACG
CCCTTTGGGC TGGATGAATC CCACCTGGCC CAGGCCTTAA AAGAAATCAA GGCGCATCAG
GTGGACGAAG CCGACCTGTA TTTTCAATAC ACGCGTTCTG AGGGCTGGAG CCTGGAAGAA
GGCATTGTCA AGACCGGCTC CTTCAGCATT GACCAGGGTG TCGGCGTGCG CGCTGTCAGC
GGCGAGAAAA CGGCGTTTGC CTATTCGGAT GACATCTCCG AGTCCTCGCT GCTGGATGCG
GCCCGCACTG TCAGGTCAAT TTCGGCTCTC GCCCAGACAA GGCGGGCGCG AGTAGCTACA
AAAAAGATAG CTTATGGGCG TTCCTTGTAC CCCGGCTTGG ACCCGATCAC CACACTCGAC
AGCGCGGCCA AGGTCAAGCT GCTGGAGCGT GTCGAGCAAC TGGCCCGTGC CAAGGACCCG
CGCGTGGCGC AGGTCATGGC GGGCGTGGCG AGCGAATACG ACGTGGTGCT GGTGGCGCGT
GCCGACGGCA TGCTGGCGGC CGATGTCCGC CCGCTGGTGC GCCTGTCGGT GACGGTGATT
GCCGAACAGG GCGTCGGCGG CAAGGTGCGG CGTGAAATGG GCTCGGCCGG TGGCGGCGGG
CGCTTTGGGC TGGCTTATTT TGACGAGGCG CTGATCACGC AATACGTCGA TGAGGCGGTG
AAAGCCGCGC TGATCAACCT GGAAGCCCGC CCGGCGCCGG CGGGTGAGAT GACCGTGGTG
CTGGGGCCCG GCTGGCCCGG CATCTTGTTG CACGAGGCGA TTGGTCATGG GCTGGAAGGC
GATTTCAACC GCAAGGGCTC CAGCGCGTTC AGTGGCCGGG TCGGCCAGCG TGTCGCCGCC
AAGGGCGTGA CCGTGCTGGA TGACGGCACC ATCGCCGACC GCCGTGGCTC GCTCAATGTC
GATGATGAAG GCAACACCAG CGCCCGCAAT GTGCTGATTG AAGATGGCAT TCTCAAGGGC
TATATGCAGG ACGCCATGAA TGCGCGCCTG ATGGGGGTGG CGCCCACCGG CAACGGGCGT
CGCGAGAGCT ACGCCCATGT GCCGATCCCG CGCATGACCA ATACCTACAT GCTCGCCGGG
GACAAGTCGC CCGACGAGAT TGTGGCCAGC ATCAAGAAGG GTCTGTACGC CACCAACTTT
GGCGGCGGCC AGGTGGACAT CACCTCGGGC AAGTTCGTGT TTTCGGCCAG TGAAGCCTAC
TGGGTTGAAA ACGGCAAGAT CCTGTACCCG GTCAAGGGCG CGACCATCGT TGGTAGCGGC
CCGGATGTGC TCAAGCGCGT CAGCATGATC GGCAATGACT TGAAGCTCGA CAGCGGTGTC
GGCACCTGCG GTAAAGAAGG CCAGAGTGTG CCGGTGGGCG TGGGGCAGCC GACCTTGCGT
ATTGATGGTT TGACGGTGGG AGGCACGGCG TGA
|
|---|
| Protein sequence | MISREPTLER LGLAKSLLLT PFGLDESHLA QALKEIKAHQ VDEADLYFQY TRSEGWSLEE
GIVKTGSFSI DQGVGVRAVS GEKTAFAYSD DISESSLLDA ARTVRSISAL AQTRRARVAT
KKIAYGRSLY PGLDPITTLD SAAKVKLLER VEQLARAKDP RVAQVMAGVA SEYDVVLVAR
ADGMLAADVR PLVRLSVTVI AEQGVGGKVR REMGSAGGGG RFGLAYFDEA LITQYVDEAV
KAALINLEAR PAPAGEMTVV LGPGWPGILL HEAIGHGLEG DFNRKGSSAF SGRVGQRVAA
KGVTVLDDGT IADRRGSLNV DDEGNTSARN VLIEDGILKG YMQDAMNARL MGVAPTGNGR
RESYAHVPIP RMTNTYMLAG DKSPDEIVAS IKKGLYATNF GGGQVDITSG KFVFSASEAY
WVENGKILYP VKGATIVGSG PDVLKRVSMI GNDLKLDSGV GTCGKEGQSV PVGVGQPTLR
IDGLTVGGTA
|
|---|
| |