| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3360 |
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| Symbol | |
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| ID | 3964223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 3730463 |
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| End bp | 3732220 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637918180 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_524600 |
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| Protein GI | 89902129 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGCCG TTTCCTCCCC GCAGGTCCGC CCACTGCCCG TGCCAGGTCG ACCTGAGAAG
CTGCGCCTGG GCGACGTGCT GGTTCAGCAG CGCCTGATTT CACAGGAACA GCTGCAAAAG
ACCCTGGACC TGCAACGCCA GACCGGCAAA AAAGTCGGCC GTCTGCTGAT CGAGACCGGC
ATCATCACCG AAGAACTGCT GGCCAATGGT CTGGCGCGGC AGTTGCGCAT TCCGTTCGTC
AACCTCAAGA CCTTCCCGTT TCGTGCCGAC GTGGTCAAGC TGCTGCCTGA ATCCGCGGCG
CGGCGTTTTC GGGCCTTGGT GCTCGAAGAC AAAGGCGACT CCCTGCTGCT GGCCTTGGGC
GACCCGCTGG ACTTGTTTGC CTTTGATGAG TTGACGCGCC TGCTCAAGCG CAACATCGCC
ATCGCGGCGG TGCCCGAAAC CCAGCTGGCG CTGGCGTTTG ACCGGCTCTA TCGCCGCACC
GAAGAGATCA GCGGCCTGGC CCGCGCGCTG GAAAAGGATC TGGGTGACGC CGTTGACTTT
GGCGAGCTCA CGGCAACGGC CGGCATCGAG GGCGCGCCGG TGGTGCGCCT GCTGCAGTCG
CTGTTTGAAG ACGCCATCCA GGTCGGCGCC TCCGACGTGC ACATTGAGCC GCAGGAAGCG
GGTCTGCAAA TCCGGGTGCG GGTCGATGGT GTGTTGCAAA CCCAAACGCT GGCCGACAAA
CGCATTGCCG GCGCCTTGGC CCAGCGCCTC AAGCTGATGG CGGGGCTTGA TATTTCTGAA
AAGCGTCTGC CGCAGGACGG CCGCTTCAGC GTCCGTCTGA AAGAGCAAAC CATTGACGTG
CGCCTGTCCA CCCTGCCCAC CAGCTACGGC GAATCGGTCG TCATGCGGCT GCTGATCCAG
GGCGCGGGCA TGCGCCGCCT GGACGGCATT GGCATGCCGG AGGCGATGCT CAAACGCTTT
CGCGAAGTAC TGGGCCGCAG CGCCGGTCTG GTGCTGGTCA CCGGGCCCAC CGGCTCCGGC
AAAACCACCA CCTTGTATGC CGCGCTGGCC GAAATCAACG CCGCCGAACT GAAAGTCATC
ACGGTCGAAG ACCCGGTGGA ATACCGCTTG CCCGGCATTA CCCAGGTGCA GGTCAACGAC
AAGATTGAGC TGAGCTTTGC GCGCGTGCTG CGCGCCACGC TGCGGCAAGA TCCTGACGTG
ATCCTGGTCG GTGAAATGCG GGACGCCGAG ACGGCCGAGA TCGGCTTGCG TGCCGCCATC
ACCGGGCATC TGGTGCTCTC GACCTTGCAT ACGCGCGACG CCATCAGCAC GCCGTTTCGG
CTGCTCGACA TGGGCGTGCC ACCGTTCATG GTAGCCACCT CCTTGCAGGC TGTGATTGCA
CAGCGGCTGG TGCGGCTCAA CTGCAGTGAA TGCGCTGAAC CGCAGGAGCC CAGCGCCCAG
GAGCTGGCCT GGCTCACCAG CATGGTCGAA GCGGGCGATG TGGTGCAAGC CCGGCGCGGT
CGGGGTTGCA GCGCCTGCAA CGGTACCGGC TATGCGGGGC GCCAGGGCAT CTACGAACTG
TTGGAGATGG ATGCCGGGCT CACCCAAGCC GCCTCGCACG CCGACCCGGC CACGTTCATG
AAGCTGGCCC GCGAGCGCAT GAAGGGCCAC ACGCTGGCGC ATCATGTGCT GGCGCTGGTG
CGCCAGGGGC GCACGTCCCT GGCCGAGGCC TTGCGCATTG GCTTCGATGT GGACGAAGAC
CTGGGCGCGC CGGACTAA
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| Protein sequence | MAAVSSPQVR PLPVPGRPEK LRLGDVLVQQ RLISQEQLQK TLDLQRQTGK KVGRLLIETG
IITEELLANG LARQLRIPFV NLKTFPFRAD VVKLLPESAA RRFRALVLED KGDSLLLALG
DPLDLFAFDE LTRLLKRNIA IAAVPETQLA LAFDRLYRRT EEISGLARAL EKDLGDAVDF
GELTATAGIE GAPVVRLLQS LFEDAIQVGA SDVHIEPQEA GLQIRVRVDG VLQTQTLADK
RIAGALAQRL KLMAGLDISE KRLPQDGRFS VRLKEQTIDV RLSTLPTSYG ESVVMRLLIQ
GAGMRRLDGI GMPEAMLKRF REVLGRSAGL VLVTGPTGSG KTTTLYAALA EINAAELKVI
TVEDPVEYRL PGITQVQVND KIELSFARVL RATLRQDPDV ILVGEMRDAE TAEIGLRAAI
TGHLVLSTLH TRDAISTPFR LLDMGVPPFM VATSLQAVIA QRLVRLNCSE CAEPQEPSAQ
ELAWLTSMVE AGDVVQARRG RGCSACNGTG YAGRQGIYEL LEMDAGLTQA ASHADPATFM
KLARERMKGH TLAHHVLALV RQGRTSLAEA LRIGFDVDED LGAPD
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