Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_3309 |
Symbol | |
ID | 3962894 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 3673002 |
End bp | 3674441 |
Gene Length | 1440 bp |
Protein Length | 479 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637918129 |
Product | MATE efflux family protein |
Protein accession | YP_524549 |
Protein GI | 89902078 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTTCCA TCTCCTCCTT GCGGCGCCTG TCAGCGCCGG CGCCGCGCGC CCGCATCGGA CGGGAAGCGC GCGCCTTGTG GCAGCTGGCG TGGCCGATCC TGATCGGGCA ACTGGCCAAC GTCGGCATGT CGGTGGTGGA GGTGGCGATG GCCGGGCATG CCTCGGCGAA CGATCTGGCC GGGGTGGCGC TGGGCGTGTC GATCTGGAAC ATGGTCATCA TCACCCTCAT GGGTGTCATG ATGGCGGTCA GCCCGGTGGT GGCCCACCTG GTGGGAGCGC GTGAATTCAG CCAGGTGCCG CATGTGGTGC GCCAGGCGCT GTGGCAGGCC CTGGGTGTGG GCTTGATTGC CGTGCTGCTG GCGAACCTGG CCGGCAGCGT GTTTGACCAC CTGGCGCTGC AGGCGCAGGT GCGCGACCTG GCGAAAGACT TTGTGGTGAT CACCAGCCTG GCCCTGCCCG CCTTTGCGGC CTACCGCGTG CTGTACGGCT ACAGCATCAG CCTGAACCAG ACCAAGCCCG TGATGGTGAT TGCGCTGGGC GCGCTGCTGC TCAACGTGGT GGTGAACTGG CTGCTGGTAT TCGGCAAGCT GGGCTTGCCC CGGCTGGGTG GCCTGGGCTG CGCCTGGTCC ACCTTGGTCT GCGTCTGGTT CAACCTGCTG GCCCTGCTGT GGTGGATGCG CCGCGCCAGC GCCTACCGCA GCACTTGGCC GTTCGCGTGC TTCGAGTGGC CGCACTGGCC GCAAGTGCGC AGCCTGCTGC ACCTGGGCTT GCCCATAGGT ATCACTTATT TTGCCGAGAC CAGCGCCTTC AGCCTGATTG CCTTGCTGAT CGCCAAATTT GGCAGCACCG AGATGGCCGC GCACCAGATT GCCCTGAATT TTTCTTCCCT GGTGTTCATG CTGCCGCTGA GTCTGGGGCT GGCGCTGCTG ACCCGCGTCG GCCAGGCGCT GGGTGCGGGC GAAGCGCACG CTGCACGTTT TCGGGCCTGG GTCGGCGTGG CCATGGCGCT GGCCTTTGCC GTGCTGTCCG CCACCGGCAT GGCGCTGTTC AACGGGCAAA TTGCCGCTGC CTACACCAGC GATGAAGCGG TGGCCGGGAC GGCGGCGCAG TTGCTGATTT TGGCGGCCTT CTTTCAGCTC TCGGATGCCA CGCAGGTCGC CACCAGTTGC GCCATTCGCG GCTACAAGGT CACGCGCGCG CCGATGCTGA TCCAGCTCAC CGCCTTCTGG GTGTTTTCGC TGCCGCTGGG TTATGCGCTG GGGCTGGCAC CCAAGTGGCT GCCGTGGGCG CCCGCCCAGC CGATGGCAGC AAGAGGTTTC TGGATCGCGC TCGTCGTGGG TTTGACGGTG GCAGCGTTGG GCTTGAGCGC CCTGCTGCGC TTTGTGGCGC GCCAGCACTT GCCGGCAGAC CAACACACAG CCATCAGCAA GCCAACTTGA
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Protein sequence | MPSISSLRRL SAPAPRARIG REARALWQLA WPILIGQLAN VGMSVVEVAM AGHASANDLA GVALGVSIWN MVIITLMGVM MAVSPVVAHL VGAREFSQVP HVVRQALWQA LGVGLIAVLL ANLAGSVFDH LALQAQVRDL AKDFVVITSL ALPAFAAYRV LYGYSISLNQ TKPVMVIALG ALLLNVVVNW LLVFGKLGLP RLGGLGCAWS TLVCVWFNLL ALLWWMRRAS AYRSTWPFAC FEWPHWPQVR SLLHLGLPIG ITYFAETSAF SLIALLIAKF GSTEMAAHQI ALNFSSLVFM LPLSLGLALL TRVGQALGAG EAHAARFRAW VGVAMALAFA VLSATGMALF NGQIAAAYTS DEAVAGTAAQ LLILAAFFQL SDATQVATSC AIRGYKVTRA PMLIQLTAFW VFSLPLGYAL GLAPKWLPWA PAQPMAARGF WIALVVGLTV AALGLSALLR FVARQHLPAD QHTAISKPT
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