Gene Rfer_3309 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_3309 
Symbol 
ID3962894 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp3673002 
End bp3674441 
Gene Length1440 bp 
Protein Length479 aa 
Translation table11 
GC content66% 
IMG OID637918129 
ProductMATE efflux family protein 
Protein accessionYP_524549 
Protein GI89902078 
COG category[V] Defense mechanisms 
COG ID[COG0534] Na+-driven multidrug efflux pump 
TIGRFAM ID[TIGR00797] putative efflux protein, MATE family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTTCCA TCTCCTCCTT GCGGCGCCTG TCAGCGCCGG CGCCGCGCGC CCGCATCGGA 
CGGGAAGCGC GCGCCTTGTG GCAGCTGGCG TGGCCGATCC TGATCGGGCA ACTGGCCAAC
GTCGGCATGT CGGTGGTGGA GGTGGCGATG GCCGGGCATG CCTCGGCGAA CGATCTGGCC
GGGGTGGCGC TGGGCGTGTC GATCTGGAAC ATGGTCATCA TCACCCTCAT GGGTGTCATG
ATGGCGGTCA GCCCGGTGGT GGCCCACCTG GTGGGAGCGC GTGAATTCAG CCAGGTGCCG
CATGTGGTGC GCCAGGCGCT GTGGCAGGCC CTGGGTGTGG GCTTGATTGC CGTGCTGCTG
GCGAACCTGG CCGGCAGCGT GTTTGACCAC CTGGCGCTGC AGGCGCAGGT GCGCGACCTG
GCGAAAGACT TTGTGGTGAT CACCAGCCTG GCCCTGCCCG CCTTTGCGGC CTACCGCGTG
CTGTACGGCT ACAGCATCAG CCTGAACCAG ACCAAGCCCG TGATGGTGAT TGCGCTGGGC
GCGCTGCTGC TCAACGTGGT GGTGAACTGG CTGCTGGTAT TCGGCAAGCT GGGCTTGCCC
CGGCTGGGTG GCCTGGGCTG CGCCTGGTCC ACCTTGGTCT GCGTCTGGTT CAACCTGCTG
GCCCTGCTGT GGTGGATGCG CCGCGCCAGC GCCTACCGCA GCACTTGGCC GTTCGCGTGC
TTCGAGTGGC CGCACTGGCC GCAAGTGCGC AGCCTGCTGC ACCTGGGCTT GCCCATAGGT
ATCACTTATT TTGCCGAGAC CAGCGCCTTC AGCCTGATTG CCTTGCTGAT CGCCAAATTT
GGCAGCACCG AGATGGCCGC GCACCAGATT GCCCTGAATT TTTCTTCCCT GGTGTTCATG
CTGCCGCTGA GTCTGGGGCT GGCGCTGCTG ACCCGCGTCG GCCAGGCGCT GGGTGCGGGC
GAAGCGCACG CTGCACGTTT TCGGGCCTGG GTCGGCGTGG CCATGGCGCT GGCCTTTGCC
GTGCTGTCCG CCACCGGCAT GGCGCTGTTC AACGGGCAAA TTGCCGCTGC CTACACCAGC
GATGAAGCGG TGGCCGGGAC GGCGGCGCAG TTGCTGATTT TGGCGGCCTT CTTTCAGCTC
TCGGATGCCA CGCAGGTCGC CACCAGTTGC GCCATTCGCG GCTACAAGGT CACGCGCGCG
CCGATGCTGA TCCAGCTCAC CGCCTTCTGG GTGTTTTCGC TGCCGCTGGG TTATGCGCTG
GGGCTGGCAC CCAAGTGGCT GCCGTGGGCG CCCGCCCAGC CGATGGCAGC AAGAGGTTTC
TGGATCGCGC TCGTCGTGGG TTTGACGGTG GCAGCGTTGG GCTTGAGCGC CCTGCTGCGC
TTTGTGGCGC GCCAGCACTT GCCGGCAGAC CAACACACAG CCATCAGCAA GCCAACTTGA
 
Protein sequence
MPSISSLRRL SAPAPRARIG REARALWQLA WPILIGQLAN VGMSVVEVAM AGHASANDLA 
GVALGVSIWN MVIITLMGVM MAVSPVVAHL VGAREFSQVP HVVRQALWQA LGVGLIAVLL
ANLAGSVFDH LALQAQVRDL AKDFVVITSL ALPAFAAYRV LYGYSISLNQ TKPVMVIALG
ALLLNVVVNW LLVFGKLGLP RLGGLGCAWS TLVCVWFNLL ALLWWMRRAS AYRSTWPFAC
FEWPHWPQVR SLLHLGLPIG ITYFAETSAF SLIALLIAKF GSTEMAAHQI ALNFSSLVFM
LPLSLGLALL TRVGQALGAG EAHAARFRAW VGVAMALAFA VLSATGMALF NGQIAAAYTS
DEAVAGTAAQ LLILAAFFQL SDATQVATSC AIRGYKVTRA PMLIQLTAFW VFSLPLGYAL
GLAPKWLPWA PAQPMAARGF WIALVVGLTV AALGLSALLR FVARQHLPAD QHTAISKPT