| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3292 |
|---|
| Symbol | |
|---|
| ID | 3962877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 3654895 |
|---|
| End bp | 3656919 |
|---|
| Gene Length | 2025 bp |
|---|
| Protein Length | 674 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637918112 |
|---|
| Product | hydrogenase 4 subunit B |
|---|
| Protein accession | YP_524532 |
|---|
| Protein GI | 89902061 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCTT TCTTTCACCC CTTATCTTGG GTCCATCTGG ACTGGGTGTT GGTGGTGGTG
GTTGCCTGGC TCTTGATCGG TGTGCTGGGC GTGTTGGCCT TGCGGCGTTT CAGGCTGGTG
GCGGTGGTGC TGTTTCCGGC GGGCGGGCTT GTCGCTTTGC TGTTGCTGGG CGTGGGCCTC
AGCGCCGCGT TCAGTGTGCC CGAGGTGGCG GTGTTGCCGA TCGGTTTGCC GCAGTTGCCC
TTTCATTTGC GGCTGGACAG TCTGTCGGCC TTCTTCCTGA TTGTCATTGG CGGGGTCGGC
GCCGGGGTGT CGGCCTTTGC CGCCGGTTAT TTTCGCCAGG GCGAGGGCAC ACCGCCGGGT
TTGATCTGCC TTGAATACCA TATCTTTCTG GCCAGCATCG CCATGGTGGT GATCGCGGAC
GACGCCTACG CCTTCATGGT GGTCTGGGAG ACCATGGCGT TTTCCTCGTT TTTTCTGGTC
ATTGCCAACC ACCGCATTCC TGAAATCCGC TTTGCGGGCT ATCTCTACAT GCTGGTGGCC
CACATCGGCG CCTTGGGCAT TCTGCTGTGT TTTGGTGTGT TGCAGGCCAA CACCGGTGAC
TACACCTTCG CCAACATGCG GGCCCAGCAT CTGTCGCCGT TCTGGGGCTC GGTGGCGTTT
GTGCTGGCGG TGTTTGGCTT TGGCGCCAAG GCCGGCATCT TGCCGCTGCA CGCCTGGTTG
CCCGAGGCGC ACCCGGCGGC GCCTTCCCCT TTCTCTGCCT TGATGAGCGG CGTGATGCTC
AAAATTGCCC TGTATGGCAT CCTGCGGGTG TCGTTTGACT TGCTGCAAAC GAAAATCTGG
TGGTGGGGTG TGCTGTTGAT GGCGATTGGC CTGTCGACGG CGCTGTTCGG CGTTGTCTTC
TCCACAGTGC AGGTGGAAAT GAAGCGTCTG CTGGCTTATT CCTCGATTGA AAACGTCGGT
TTGATCTGCA CCGGTTTCGG CTTGTCGCTG TTGTTCTCAA GCTATGGCAT GCACGCCCTG
GCCGCCCTGG CTCTGACGGC GGCCTTGTAT CACCTGCTCA GCCACGCGTT TTTCAAGAGC
CTGTTGTTCT GCAGCACCGG AGCCGTCTTG CACGCCACCG GCGAGCGCAG CCTGGGTAAA
TTGGGTGGCC TGATGCGCTA CATGCCCTGG GTCGCCTGGC CGACCCTGAT CGGCGTCCTG
GCCTGTGCCG GTCTGCCGCC TTTTGGCGGT TTTGTCGCGG AGTGGTTGCT GCTGCAAAGC
TTCTTGTTCA CCTCCGGCTT GCCGAGCTCG GTCCTCAATA TGCTGGTGCC GGTGCTGGCG
GCCTTGATTG CGCTGATTGC CGCGCTGTCG GGTTACACCA TGGTCAAGTA CTTTGGCGTC
ATCTTCCTGG GCCAGCCGCG TGAGGAAAAG CTCTCAGGCG CGCATGACGC CGGCACCTGG
GAGCGCGCGG GTATGCTTTG GCTCACGGCG GGCTGTGTGG TGCTGGGGCT TTTTCCGAAC
CAGGTCATTG CCCTGATTGA TCCTGTCACC CAATTGTTGG TGTCCGCCGG TCTGGTCAAG
ACGGTGGCGG CCAGCGGCTG GCTGCTGGTG CCCGTGAGCA TCGAGCGCGC CAGTTATGCG
CCGGCGATCT TCCTGCTTGG CGTGATGTTC TTCTTTGCCT TGACCTATTT GCTGGTACGC
CGCTTTTACA GCGGCCGTAT TCGGCGCGCG CCTGCCTGGG ACTGCGGTTA TCCGTGGCAA
GACGCCCGCA TGCAGGACAC GGCAGAAGGA TTCGGGCAGC CGATCCGGCA GATTTTCGAG
CCCATGTTTC GCATGAAACG CGAACTGCCT TCGCCATTCG ACGAGCAGCC ACGTTACCGG
GTGACGGTCG AAGATCCGCT CTGGTACTGG CTCTACCTGC CGATAGCCAG ACTGGTTGAG
CGCATCTCGA AAGTGATTGG ACTGTTGCAG CAGGGGCGCA TCGCGGTCTA TCTGATGTAC
AGCTTTCTGA CCTTGATCGT GGTGCTGCTG GTGGTGAAGC AATGA
|
|---|
| Protein sequence | MNAFFHPLSW VHLDWVLVVV VAWLLIGVLG VLALRRFRLV AVVLFPAGGL VALLLLGVGL
SAAFSVPEVA VLPIGLPQLP FHLRLDSLSA FFLIVIGGVG AGVSAFAAGY FRQGEGTPPG
LICLEYHIFL ASIAMVVIAD DAYAFMVVWE TMAFSSFFLV IANHRIPEIR FAGYLYMLVA
HIGALGILLC FGVLQANTGD YTFANMRAQH LSPFWGSVAF VLAVFGFGAK AGILPLHAWL
PEAHPAAPSP FSALMSGVML KIALYGILRV SFDLLQTKIW WWGVLLMAIG LSTALFGVVF
STVQVEMKRL LAYSSIENVG LICTGFGLSL LFSSYGMHAL AALALTAALY HLLSHAFFKS
LLFCSTGAVL HATGERSLGK LGGLMRYMPW VAWPTLIGVL ACAGLPPFGG FVAEWLLLQS
FLFTSGLPSS VLNMLVPVLA ALIALIAALS GYTMVKYFGV IFLGQPREEK LSGAHDAGTW
ERAGMLWLTA GCVVLGLFPN QVIALIDPVT QLLVSAGLVK TVAASGWLLV PVSIERASYA
PAIFLLGVMF FFALTYLLVR RFYSGRIRRA PAWDCGYPWQ DARMQDTAEG FGQPIRQIFE
PMFRMKRELP SPFDEQPRYR VTVEDPLWYW LYLPIARLVE RISKVIGLLQ QGRIAVYLMY
SFLTLIVVLL VVKQ
|
|---|
| |