Gene Rfer_3196 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_3196 
Symbol 
ID3963066 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp3536350 
End bp3537384 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content63% 
IMG OID637918015 
ProductApbE-like lipoprotein 
Protein accessionYP_524436 
Protein GI89901965 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.764413 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTTCTC CTGCGTCTGA TCGCATTCAA CACGGGCGGC GTCAGCTTGC ATTGGCCTTG 
CCACTGTTGG CGTGTGGCCT GGTGGTGCCG TCGGTGCACG CCAAGGCGGA TGTTCAGCAG
TCCTCGCAAA TTCTGATGGG CACGCGGGTC GACCTGACGC TGCAGGGCAA TGACAGTGCA
GCCCTGGCCG CTGCCGCAAC TGCAGCGTTC ACCGAGATGA ACCGGTTGGC CGACATGATG
AGCCGCTACC GTGTGACGAG CGCACTGAAC GCCATCAACC TGATGGCGGG TCTGCAACCG
GTGCCAGTAC CGCCGGAGTT GCTGCGCGTG CTGTTGATGG CGCGTCAGGC GGGACAGGCC
AGTGGCGGGG CTTTTGATGC CACGGTCGGG TCTTTGCGGG ACTGGGATTT CAGCCCCGAG
CATCCGTCCA TCCCCTCAAA GCAGCAGATC GCAGCGCAAT TGCGGCTGGT CGATCAAAAA
GCCGGTCTGG TGATCAGTGA ACATGCGGGC ACGGCCTATC TGACCCAAAG AGGCATGCTG
CTGGATCTGG GCGGCATTGC CAAACTGCCC ATTCTTCAGG CTGGCCTGGG GCAACTTCAA
AGCCGTGGCG TCACCAACGC GATGATCAAC GGCGGTGGCG ACGTGCTGGT GATGGGCCGT
TTGAATGGCC GCCCCTGGCG CGTGGGCCTG CGCGACCCGC GTCAACCCAG CCAATTATTG
GGTGTGGTGT CCTTGACCCA GGGTTTTGTC GCGGCCTCCG GCGATTACGA ACGTTTCATG
ATGCACGACG GCAAGCGCTT GCATCACATC CTTGATCCCA AAACCGGCTA CCCCAGTACC
GGTCCCCATG GGGTTACCTT GATCAGTGAG CAACTCGAAC TCATCAACGG TCTGGGCGCG
GCCCTGATGG TGGCGGGTGC CGATGCCGGG CGAACCCGGG TCGGCCGCAC ACCGGGAATC
GATGCCTTGA TCGTTGATGC CGACAGCAGC CTCTGGCTGT CGCCCGGTAT GGCGCAGCGG
TTCAAGCGCA GCTGA
 
Protein sequence
MASPASDRIQ HGRRQLALAL PLLACGLVVP SVHAKADVQQ SSQILMGTRV DLTLQGNDSA 
ALAAAATAAF TEMNRLADMM SRYRVTSALN AINLMAGLQP VPVPPELLRV LLMARQAGQA
SGGAFDATVG SLRDWDFSPE HPSIPSKQQI AAQLRLVDQK AGLVISEHAG TAYLTQRGML
LDLGGIAKLP ILQAGLGQLQ SRGVTNAMIN GGGDVLVMGR LNGRPWRVGL RDPRQPSQLL
GVVSLTQGFV AASGDYERFM MHDGKRLHHI LDPKTGYPST GPHGVTLISE QLELINGLGA
ALMVAGADAG RTRVGRTPGI DALIVDADSS LWLSPGMAQR FKRS