| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3185 |
|---|
| Symbol | |
|---|
| ID | 3963055 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 3523348 |
|---|
| End bp | 3524688 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637918004 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_524425 |
|---|
| Protein GI | 89901954 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCATCC CCACCACTCC CAACGCCCCC ACCCCCGCTG CGGCCCCGGG CGAAGCTCTC
TCAAGTGCCA ACCTGCAGAC GCTGCTCAAG GAAGGCCCCA AGCGGGTCTG GTGGCGCCGC
ACCACGCTCT GGATCATTGT CGGTCTGCTG GTTCTGTCGG GCGTGGGCTA CTATTTTTGG
CAGGCCAGCG CAACGCGCAA TGCAACACCG GTTTTTGTGA CCGAGCCCGC CAACAAAGGC
AATCTGACAC TCACCGTGGC GGCCAACGGC ACGATACAAC CCACCCGCTC GGTGAGCATC
GGCAGCGAAC TCTCAGGCAC CGTGCTGCGG GTGCTGGTGG ACGTGAATGA TCAGGTCAAA
AAAGGCCAGG TGCTGGTCGA GCTTGACACC GCCAAGCTGA GCGATCAGGT CGCGCGCTCG
CGCGCCGCAC TCAGCGCTGC GCGAGCCCAG GTGGCGCAAG CGGTGGCCAC CGTCAGCGAA
GCCCAGGGCA ACTTGGGCCG GCTGGAAGAA GTGGCGCGCT TGTCCGGCGG CAAGGTGCCC
TCCAAAGCCG AGCTTGATTC CGGCCGTGCC ACGCTGGAGC GAGCCCAGGC CGAGGAGTTG
AGCGCCCGCG CCAACGTGGT GCAAGCGCAG GCGACGGTAT CGACCGACGA AACCAACCTG
TCCAAAGCGT CCATCCGCTC ACCCACCGAT GGGGTGGTGT TGACCCGCAC GGTGGACCCC
GGCAATGCCG TCGCGGCCTC ACTGCAAGCC GTCACCTTGT TCACGGTGGC CGAAGACCTG
AGCAAACTCC GGCTGCAAGT CAACGTGGAC GAGGCCGACG TGGGCTCGGT CAAAGTCGGG
CAGAAAGCGC GCTTTACCGT CAGCGCCTAC CCGGCGCGCA ACTACCCGGC CACCATCACC
CGCGTGGCGT TTGGCAGCAC CATCACCGAG AACGTGGTGA CCTACATCAC CTACATGGAG
GTTGACAACA AGGATCTGAG CTTGCGCCCT GGCATGACGG CCTCCGCCAC CATCACCTCG
ACCGAGCGCA ATGACGTCCT GCTGGTGCCC AACACGGCAC TGCGCTTCTC GCCGTCCGTC
AGCGGCGGTG CCGCCGGTGC AGCCAAGAGC GGCGGCATCA TGTCGAGCCT GCTGCCGCGC
ATGCCGCGCA CCGGCGCCCG CAAGTCGGCC GGTGGCAGCG GTCCGTCCAA GCAAGTGTGG
GTGCTGCGTG ACGGTGCGGC CGTGGCCGTG GACGTGAAGA CCGGCATCAG CGACGGCCGC
ATGACCGAGA TCACCGGCGG CGAGTTGCAG CCCGGCATGC TGGTCATCAC CGACCAGCGT
AGCGGGGGTA CCGCGCCATG A
|
|---|
| Protein sequence | MTIPTTPNAP TPAAAPGEAL SSANLQTLLK EGPKRVWWRR TTLWIIVGLL VLSGVGYYFW
QASATRNATP VFVTEPANKG NLTLTVAANG TIQPTRSVSI GSELSGTVLR VLVDVNDQVK
KGQVLVELDT AKLSDQVARS RAALSAARAQ VAQAVATVSE AQGNLGRLEE VARLSGGKVP
SKAELDSGRA TLERAQAEEL SARANVVQAQ ATVSTDETNL SKASIRSPTD GVVLTRTVDP
GNAVAASLQA VTLFTVAEDL SKLRLQVNVD EADVGSVKVG QKARFTVSAY PARNYPATIT
RVAFGSTITE NVVTYITYME VDNKDLSLRP GMTASATITS TERNDVLLVP NTALRFSPSV
SGGAAGAAKS GGIMSSLLPR MPRTGARKSA GGSGPSKQVW VLRDGAAVAV DVKTGISDGR
MTEITGGELQ PGMLVITDQR SGGTAP
|
|---|
| |