| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3174 |
|---|
| Symbol | |
|---|
| ID | 3962699 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 3510431 |
|---|
| End bp | 3511336 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637917993 |
|---|
| Product | MotA/TolQ/ExbB proton channel |
|---|
| Protein accession | YP_524414 |
|---|
| Protein GI | 89901943 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0811] Biopolymer transport proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.876301 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCGGG ATGCCGCATC CTTTATTTTT CTCAAAGCAA ACACTGTGCA GATCAAGACA
AGTCGAATGA TCGCCTCCGG CGCCTGCACG CTGGGACTGG TTTTAACGCT GGTGCCGGGC
GTGGTGCAGG CCCGATCGAC AGTCGCTGCG ACTGCTTCCA GCGCTGCTCC TGCTGCCCTG
CCCGCCATCA CCGACGTGAA GCCGGTCGAT CCGTCCGCTG CTGCCGCCAG GAAAGCCCCG
GATGCAGTTG ACAACCCCTA CGGTTTTGAA GCGCTCTGGA AAACGTCTGA TGCAGTCGCC
AGGACCGTTC TGCTGCTGCT GCTCATCATG AGCGTTGGCA GCTGGTACAT CATGATCGTC
AAGGTTCTGG AGCAAGCCAA GATGGGGCGC CAGGCCAAAG CGGCGGCCCG GGATTTTTGG
TCCGCCGATA CCGTCCAGCA GGGCGCTGCC GCACTGGAGG CCAACAGCCC CTTTCGATTC
ATGGCTGAAG CGGCGACCAC TGCGGTCAAA AAACATGAAG GCCTGATGGG CCACATTCCA
CTCAACGACT GGATCGCCAT GCGCATCCAG CGTGCGGTCG ATCGCATTCA AAGCAATACG
CAGGGCGGCC TGGCGTTTCT TGCCACCGTT GGCTCGATTT CTCCTTTTGT CGGCCTGTTC
GGCACGGTCT GGGGCATCTA CCATGCACTC ACCGCCATTG GCATCTCCGG CCAGGCTTCC
ATCGACAAGG TGGCAGGCCC GGTCGGTGAG GCGCTGCTCA TGACCGCGAT TGGGCTGGCG
GTGGCGGTGC CCGCGGTGCT GGCCTACAAC TGGCTGGTGC GGCGCAACAA GGCCGTGATG
GACGAGGTGC GCGCCTTCAG CAGCGACCTG CACGCGGTGG TGCTGGGTTC GGTGGCAAAG
ACCTGA
|
|---|
| Protein sequence | MDRDAASFIF LKANTVQIKT SRMIASGACT LGLVLTLVPG VVQARSTVAA TASSAAPAAL
PAITDVKPVD PSAAAARKAP DAVDNPYGFE ALWKTSDAVA RTVLLLLLIM SVGSWYIMIV
KVLEQAKMGR QAKAAARDFW SADTVQQGAA ALEANSPFRF MAEAATTAVK KHEGLMGHIP
LNDWIAMRIQ RAVDRIQSNT QGGLAFLATV GSISPFVGLF GTVWGIYHAL TAIGISGQAS
IDKVAGPVGE ALLMTAIGLA VAVPAVLAYN WLVRRNKAVM DEVRAFSSDL HAVVLGSVAK
T
|
|---|
| |