Gene Rfer_2918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_2918 
Symbol 
ID3960435 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp3227411 
End bp3229804 
Gene Length2394 bp 
Protein Length797 aa 
Translation table11 
GC content57% 
IMG OID637917737 
Productpenicillin-binding protein 1A 
Protein accessionYP_524160 
Protein GI89901689 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG5009] Membrane carboxypeptidase/penicillin-binding protein 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.850822 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCTCCA AATCACCCGC TAGCGAGACC AGCCCATCCC ACCAAGCCAA CTCTGGCGCA 
ACTGCCGTGC AGTGGCTGCT GCGCATCGTG CTATGGGCCG GTGGTCTGCT ATTGGCCGGC
ATATTGTCAA TTCTGATCAT CGTTGCCATT GCGATGGCAG TGGCGTTTCC AAATCTACCC
GACATTTCGG ATTTGTCTGA TTACCGCCCC AAATTGCCGT TGCGTGTGTA TTCCGTCGAA
GGTGTTTTGA TTGGGGAGTT TGGCGAGGAG CGCCGACACC TGACACCGAT CAAGGAAATC
CCCAAGGTCA TGACGGATGC GGTGCTGGCC ATTGAGGATG CACGTTTTTA CGAACACAGC
GGCATCGATT ACAAGGGCGT ATTGCGCGCG GCGCTGGCCA ACCTGGGGCG CATCAAGAGC
CAGGGCGCCT CCACCATTAC CATGCAGGTG GCACGCAACG TTTATCTGTC AACCGAAAAA
ACCTATACCC GCAAGATTTA TGAGATGTTG CTGACCTTCA AGTTGGAGCA TTTATTGACC
AAGGATCAGA TTCTTGAAAT CTACATGAAT CAGATTTTTC TGGGTAATCG TGCCTATGGC
TTTGCCGCTG CGTCTGAGGC CTATTTTGAC AAGCCGCTGA AAGACATCTC CATTGCAGAA
GCGGCCATGT TGGCCGGATT ACCCAAGGCG CCATCGGCCT ACAACCCGAT CAGCAACCCC
AGGCGAGCCA AGGCGCGGCA GTTGCATATC ATTGATCGTA TGCTGGAAAA CGGCTTCATC
ACGGAAGAAC AGGCGCTGAC CGCCAGACAG GAAAAGCTCA CCGTGAAGTC CAGTGCAGAG
CACGCCAAAG TGCACGCCGA GTACGCGGCC GAGACCGTAC GTCAGTTGAT GTTCGCGCAG
TATGGCAATG AGACTTACAC CCGTGGCCTG AACGTGTACA CCACTTTGCG CGCGGCCGAC
CAGGAGGCAG CCTACAAGTC TTTGCGGCGG GGCATCATGG ATTTTGAGCG GCGCCAGATT
TACCGGGGGC CGGAGGAATT CGTCTCGCTG CCGTCCGATC CGCAGGAACT TGAGGACGCC
ATTGACGAGG CTTTGGGTGA GCACCCTGAT GACGGCGACG TGATGTCGGC CCTGGTGCTG
GGTGCAGACG CCAAGAAGAT CACTGCGGTA CGCCTGAACG GAGAAACCGT TGAAATTACC
GGCGAAGGCC TCAAGCCGGC TCAATCAGGC CTGTCGGACA AAGCGCCACC CAACATCAAG
ATTCGGCGCG GCGCCGTGAT TCGGGTGACC AAGACGCCAA AAAATACCTG GGAAATCACG
CAATTGCCGG AGGTGGAAGG TGCGTTTGTG GCGCTGGATC CGCGCAATGG CGCCATCAAG
GCCTTGGTCG GCGGTTTTGA TTTCCAGAAG AATAAATTTA ACCATGTGAC GCAAGCCTGG
CGTCAACCGG GTTCCAGTTT CAAGCCTTTT ATCTACTCCG CTGCCCTCGA AAAAGGCTTT
ACCCCGGCGA CCATCATCAA CGATGCCCCA ATCTTTTTTA GCGCCGGTGT GACCGGAGGG
CAGCCTTGGG AGCCCAAAAA TTATGATGGC AAATTTGAAG GTCCCATGAC GATGCGCCGG
GGGCTGGCCA AGTCCAAGAA CATGATCTCT ATCCGCATCC TGCAAGCGGT GGGTGCACAA
AATGCGCAGG ACTGGATCAC GCGCTTTGGT TTCGAAGCCG ACAAGCACCC CGCCTACCTC
ACCATGGCCT TGGGTGCCGG CTCCGTCACG CCCCTGCAAA TGGCTTCGGC CTATTCGGTC
TTTGCCAACG GCGGCTACCG CATCAATCCG TGGCTGATCA GCAAAGTGAC CGAACAGAAA
GGAAAAGTCC TGCTGGAAAC CAAGTCACCG GTGCTCGACG AGTCGATGCG TGCCATTGAT
GCGCGCAACG CTTTCATCAT GGACAGTCTG TTGCAGGAAG TGACCCGCAC CGGCACGGCG
GCCTCCGCCC AGGCGATCTT GAAGCGCCCT GACTTGTACG GCAAAACCGG CACCACCAAT
GATTCGGTGG ATGCCTGGTT TGCGGGATTC CAGCCCACGC TGGCTGCCGT CAGCTGGATT
GGCTATGACA CGCCGCGCAA TCTTGGCGCG CGTGAAACGG GTGGCGGCTT GAGCCTGCCG
ATCTGGATCC GGTTCATGCA GCAGGCGCTC GCCAATGTCC CTGTGACAGA ACCGAGCGTT
CCGGAGGGCG TTGTTAATTC AGGTGGCGAA TGGTTTTACA ACGAGTATGC CAACAAGGCG
GGTGTCACCA GTGTCGGGCT CGATGAGCCC TCAGGGATGC AAGGTGGCAA CCAGGTGATT
GAGTTGCCAC CCGCCGATGA ACGAAAGAAA ATTCTGGATT TGTTCAGGAA TTAA
 
Protein sequence
MPSKSPASET SPSHQANSGA TAVQWLLRIV LWAGGLLLAG ILSILIIVAI AMAVAFPNLP 
DISDLSDYRP KLPLRVYSVE GVLIGEFGEE RRHLTPIKEI PKVMTDAVLA IEDARFYEHS
GIDYKGVLRA ALANLGRIKS QGASTITMQV ARNVYLSTEK TYTRKIYEML LTFKLEHLLT
KDQILEIYMN QIFLGNRAYG FAAASEAYFD KPLKDISIAE AAMLAGLPKA PSAYNPISNP
RRAKARQLHI IDRMLENGFI TEEQALTARQ EKLTVKSSAE HAKVHAEYAA ETVRQLMFAQ
YGNETYTRGL NVYTTLRAAD QEAAYKSLRR GIMDFERRQI YRGPEEFVSL PSDPQELEDA
IDEALGEHPD DGDVMSALVL GADAKKITAV RLNGETVEIT GEGLKPAQSG LSDKAPPNIK
IRRGAVIRVT KTPKNTWEIT QLPEVEGAFV ALDPRNGAIK ALVGGFDFQK NKFNHVTQAW
RQPGSSFKPF IYSAALEKGF TPATIINDAP IFFSAGVTGG QPWEPKNYDG KFEGPMTMRR
GLAKSKNMIS IRILQAVGAQ NAQDWITRFG FEADKHPAYL TMALGAGSVT PLQMASAYSV
FANGGYRINP WLISKVTEQK GKVLLETKSP VLDESMRAID ARNAFIMDSL LQEVTRTGTA
ASAQAILKRP DLYGKTGTTN DSVDAWFAGF QPTLAAVSWI GYDTPRNLGA RETGGGLSLP
IWIRFMQQAL ANVPVTEPSV PEGVVNSGGE WFYNEYANKA GVTSVGLDEP SGMQGGNQVI
ELPPADERKK ILDLFRN