Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_2918 |
Symbol | |
ID | 3960435 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 3227411 |
End bp | 3229804 |
Gene Length | 2394 bp |
Protein Length | 797 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637917737 |
Product | penicillin-binding protein 1A |
Protein accession | YP_524160 |
Protein GI | 89901689 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.850822 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCTCCA AATCACCCGC TAGCGAGACC AGCCCATCCC ACCAAGCCAA CTCTGGCGCA ACTGCCGTGC AGTGGCTGCT GCGCATCGTG CTATGGGCCG GTGGTCTGCT ATTGGCCGGC ATATTGTCAA TTCTGATCAT CGTTGCCATT GCGATGGCAG TGGCGTTTCC AAATCTACCC GACATTTCGG ATTTGTCTGA TTACCGCCCC AAATTGCCGT TGCGTGTGTA TTCCGTCGAA GGTGTTTTGA TTGGGGAGTT TGGCGAGGAG CGCCGACACC TGACACCGAT CAAGGAAATC CCCAAGGTCA TGACGGATGC GGTGCTGGCC ATTGAGGATG CACGTTTTTA CGAACACAGC GGCATCGATT ACAAGGGCGT ATTGCGCGCG GCGCTGGCCA ACCTGGGGCG CATCAAGAGC CAGGGCGCCT CCACCATTAC CATGCAGGTG GCACGCAACG TTTATCTGTC AACCGAAAAA ACCTATACCC GCAAGATTTA TGAGATGTTG CTGACCTTCA AGTTGGAGCA TTTATTGACC AAGGATCAGA TTCTTGAAAT CTACATGAAT CAGATTTTTC TGGGTAATCG TGCCTATGGC TTTGCCGCTG CGTCTGAGGC CTATTTTGAC AAGCCGCTGA AAGACATCTC CATTGCAGAA GCGGCCATGT TGGCCGGATT ACCCAAGGCG CCATCGGCCT ACAACCCGAT CAGCAACCCC AGGCGAGCCA AGGCGCGGCA GTTGCATATC ATTGATCGTA TGCTGGAAAA CGGCTTCATC ACGGAAGAAC AGGCGCTGAC CGCCAGACAG GAAAAGCTCA CCGTGAAGTC CAGTGCAGAG CACGCCAAAG TGCACGCCGA GTACGCGGCC GAGACCGTAC GTCAGTTGAT GTTCGCGCAG TATGGCAATG AGACTTACAC CCGTGGCCTG AACGTGTACA CCACTTTGCG CGCGGCCGAC CAGGAGGCAG CCTACAAGTC TTTGCGGCGG GGCATCATGG ATTTTGAGCG GCGCCAGATT TACCGGGGGC CGGAGGAATT CGTCTCGCTG CCGTCCGATC CGCAGGAACT TGAGGACGCC ATTGACGAGG CTTTGGGTGA GCACCCTGAT GACGGCGACG TGATGTCGGC CCTGGTGCTG GGTGCAGACG CCAAGAAGAT CACTGCGGTA CGCCTGAACG GAGAAACCGT TGAAATTACC GGCGAAGGCC TCAAGCCGGC TCAATCAGGC CTGTCGGACA AAGCGCCACC CAACATCAAG ATTCGGCGCG GCGCCGTGAT TCGGGTGACC AAGACGCCAA AAAATACCTG GGAAATCACG CAATTGCCGG AGGTGGAAGG TGCGTTTGTG GCGCTGGATC CGCGCAATGG CGCCATCAAG GCCTTGGTCG GCGGTTTTGA TTTCCAGAAG AATAAATTTA ACCATGTGAC GCAAGCCTGG CGTCAACCGG GTTCCAGTTT CAAGCCTTTT ATCTACTCCG CTGCCCTCGA AAAAGGCTTT ACCCCGGCGA CCATCATCAA CGATGCCCCA ATCTTTTTTA GCGCCGGTGT GACCGGAGGG CAGCCTTGGG AGCCCAAAAA TTATGATGGC AAATTTGAAG GTCCCATGAC GATGCGCCGG GGGCTGGCCA AGTCCAAGAA CATGATCTCT ATCCGCATCC TGCAAGCGGT GGGTGCACAA AATGCGCAGG ACTGGATCAC GCGCTTTGGT TTCGAAGCCG ACAAGCACCC CGCCTACCTC ACCATGGCCT TGGGTGCCGG CTCCGTCACG CCCCTGCAAA TGGCTTCGGC CTATTCGGTC TTTGCCAACG GCGGCTACCG CATCAATCCG TGGCTGATCA GCAAAGTGAC CGAACAGAAA GGAAAAGTCC TGCTGGAAAC CAAGTCACCG GTGCTCGACG AGTCGATGCG TGCCATTGAT GCGCGCAACG CTTTCATCAT GGACAGTCTG TTGCAGGAAG TGACCCGCAC CGGCACGGCG GCCTCCGCCC AGGCGATCTT GAAGCGCCCT GACTTGTACG GCAAAACCGG CACCACCAAT GATTCGGTGG ATGCCTGGTT TGCGGGATTC CAGCCCACGC TGGCTGCCGT CAGCTGGATT GGCTATGACA CGCCGCGCAA TCTTGGCGCG CGTGAAACGG GTGGCGGCTT GAGCCTGCCG ATCTGGATCC GGTTCATGCA GCAGGCGCTC GCCAATGTCC CTGTGACAGA ACCGAGCGTT CCGGAGGGCG TTGTTAATTC AGGTGGCGAA TGGTTTTACA ACGAGTATGC CAACAAGGCG GGTGTCACCA GTGTCGGGCT CGATGAGCCC TCAGGGATGC AAGGTGGCAA CCAGGTGATT GAGTTGCCAC CCGCCGATGA ACGAAAGAAA ATTCTGGATT TGTTCAGGAA TTAA
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Protein sequence | MPSKSPASET SPSHQANSGA TAVQWLLRIV LWAGGLLLAG ILSILIIVAI AMAVAFPNLP DISDLSDYRP KLPLRVYSVE GVLIGEFGEE RRHLTPIKEI PKVMTDAVLA IEDARFYEHS GIDYKGVLRA ALANLGRIKS QGASTITMQV ARNVYLSTEK TYTRKIYEML LTFKLEHLLT KDQILEIYMN QIFLGNRAYG FAAASEAYFD KPLKDISIAE AAMLAGLPKA PSAYNPISNP RRAKARQLHI IDRMLENGFI TEEQALTARQ EKLTVKSSAE HAKVHAEYAA ETVRQLMFAQ YGNETYTRGL NVYTTLRAAD QEAAYKSLRR GIMDFERRQI YRGPEEFVSL PSDPQELEDA IDEALGEHPD DGDVMSALVL GADAKKITAV RLNGETVEIT GEGLKPAQSG LSDKAPPNIK IRRGAVIRVT KTPKNTWEIT QLPEVEGAFV ALDPRNGAIK ALVGGFDFQK NKFNHVTQAW RQPGSSFKPF IYSAALEKGF TPATIINDAP IFFSAGVTGG QPWEPKNYDG KFEGPMTMRR GLAKSKNMIS IRILQAVGAQ NAQDWITRFG FEADKHPAYL TMALGAGSVT PLQMASAYSV FANGGYRINP WLISKVTEQK GKVLLETKSP VLDESMRAID ARNAFIMDSL LQEVTRTGTA ASAQAILKRP DLYGKTGTTN DSVDAWFAGF QPTLAAVSWI GYDTPRNLGA RETGGGLSLP IWIRFMQQAL ANVPVTEPSV PEGVVNSGGE WFYNEYANKA GVTSVGLDEP SGMQGGNQVI ELPPADERKK ILDLFRN
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