| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2896 |
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| Symbol | |
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| ID | 3963376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3200700 |
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| End bp | 3204197 |
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| Gene Length | 3498 bp |
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| Protein Length | 1165 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637917715 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_524138 |
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| Protein GI | 89901667 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.522615 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGACT CTCAACCCGC CCCAGCCTAC GAGCACAACG GCCAGCTCAT CAGCGCCGAG
GCTTTCTACG CCATCGCCTG CGACCCGCGC CGCAGTGTCG CGGTGGAGGC TTGCGCCGGT
GCCGGCAAGA CCTGGATGCT GGTGTCGCGC ATCGTGCGCG CTTTGCTTGA TGGGGTGGAT
GCATCGAGTG GCGAGTTGCG GGTGCAGCCG CACGAGATTC TGGCCATCAC CTTCACCAAG
CGGGCGGCCA GCGAGATGCG CGAGCGGCTG TATCAATGGC TGGCAGAGTT TGCCGTGGCC
GATCGCGCCA CCCTGCTCAA GGAGCTGACG CTGCGTGGCG TTTTGGATAA AAATGAGCTC
CATCCCCCGT CCGTGCTGCC TGAGCAGCTA TCAAAGTTGT ATCAGAATAT CTTGCGCAGC
GGGCGCCAGG TGCAGGTGCG CACTTTCCAC AGCTGGTTTG CTGCCTTGCT GCGCAGTGCG
CCGCTGGCGG TTTTGCAGCA GATGGAGCTG CCTGCCAACT ACCAGTTGCT GGAGGACGAT
ACCCCGGCCA AAGCCCTGGT CTGGCGGCGT TTTTATGCCG CGCTGCTGCG GCCAAAGCCA
GCGCAGGTCG GCGGCGCCGA GTTGCGTGGT GACGCGCCTG ATGAATCATG TGGTTTCACC
CTGCAGTTTG ATTACGAGGC GGTGGTGTTT GACTACGGCC GCGCGCAGAC CGACAAAGCC
CTGCAAACCG CGCTCGACAA GCGCACCGAA TTTACCCTGG CCGATGCGCA AGGCGTGGTG
CTGCGCTCGG TGTTGCCGTT TGGCACGCAA TTCCCCGAGT TTGCCGGCTT GGGCACGCCC
GATGATTTTT TGCGCGACCA GCCGCAGCGC TGGCAAATCC TGCTCGACGC CGCCGCCGCC
TTGGGCCGTG CCAGTGCCAA GACGTTTGCT GCCAAAGGGG TGGAGCTTGA AATGGCGCTC
TCAAGCGGTG ACCTGTCGGC CGCGTTTGCC GCCTTGCTGA CCGACAAGGA CGCGCCGCGC
AAGTTCAGCG AGAAGATCGC CGGTATTGAG GCCGTGCGTG AGGCCCAGGA CCTGGTGCTG
CGCGTGGTGG CGGCCCGCTT GCAACACGCG GCCTGGACTT ACCAGCAACG CATGGCGCGC
CTGACCCGGG CGCTGCTCAA GGAGTTCGCG GCCCTCAAAC GGGAGCACGG CTGGGTTGAC
ATGAACGATG TGGAGCGCGC CGCGCTGGTG ATGCTCAGTG ACCCGGTGCT CTGCGGCTGG
GTGCAGGAGC GGCTCGATGC GCGCATCAAA CACCTGCTGA TCGACGAGTT TCAGGACACC
AACCCGCTGC AGTGGCAGGC GCTCAAGTCC TGGCTCAGTG GCTACGCGGG CACGGGCGGG
GGCGCAAGCG GTGGCGCTGG CGCCACGGCG CCCCGAGTGT TCATCGTGGG TGACCCCAAG
CAGAGCATTT ACCGCTTTCG CCGGGCCGAG CCGCAAGTGT TCAAGGCGGC CAAAGCCTTT
GTGCGCGACG GTTTGAACGG CGATCTGCTC AGTTGCGACC ACACCCGGCG CAACGCCACC
GGGGTCATCG CCGTCGTGAA CGCCGTCATG ACGCAGGCGG TGCAGGCCGA TGGCTACGAG
GGGTTCAGAG CGCATACCAC CAGCGCCTCC GAGCTGGGAC TGGTTTGCAA GCTGCCGCCG
ATTGCCAGGC CAGAGCGTCT GGCGGGGGCC GCATCCAGCG GCGATGAGAC CGAAGGGGGC
GGGACGGCCA GCGCCGGCTG GCGCGACAGC CTGGATACGC CGCGCGAGCT GCCGGAGGAA
ACCCTGCGCA CCCTGGAGGC GCGCCAAGCG GCGCACTGGA TTGCGCAGCA GTTGGCCAGC
GCCGAGACGC CCGATACCGA GGGGCGCGGC CTGCAGGCCG CTGACGTGAT GGTGCTGTCA
CGCAAGCGCG CGGGCTTGCT GCCCTTGCAG TTGGAGTTGC GCAAGTTGCA CATCGCGGCC
CAGATTGGCG AAAAAACCAA TCTCATTGAC TGCTGCGAAG TGCAGGACCT GGTGGCCCTG
CTGGACGTGC TGGTGTCGCC CCGGCATGAC CTGTCGCTGG CGCGGGTGCT CAAGTCGCCT
TTGTTTGACA TGACCGACGC TGCGCTGGTG CAGCTGGCGC AAGCGGTGCG GGCGCAGTCG
CAGCCGCCCG CCGATGGGTC ATGGTTTGAC GTGCTGCAAA AATCAGAGCT GTCGACGCAG
GACGGACGGG GGCTAGCGGC TTGTTTGATG CGATGGAAAG GCTGGCTGGA TCAATGGCCG
CCGCACGATG CGCTGCAGGC CATTTACTTT GACGGCGACG TGCTGGCCCG CTTTGCGGCG
GCAGCACCGG CCAGCCAGCG CGACGCCGTA CTGGCCAACC TGACAGCCTT GCTGGGGATG
TCGCTGCAGC TCGACGGCGG ACGTTTTTCG ACCCCTTATG CGTTTGTGCG CGCCCTTAAA
GGTGGTGGCG TGCTGGCGCC TGCCGCCGTC AACCCGCAGG CGGTTCGCCT GCTCACTGTG
CACGGCGCCA AAGGGCTGGA GGCGCAGGTC GTGCTCTTGC TTGACACCGA CACGCCCGAG
CGCAACGCCG ACACCATGGG TGTGCTGATT GACTGGCCGG GGGAGGCCGC GTGGCCGAGC
AAATTTGTGT TTTTGGCCAG TGAGAGCCAA CCGCCCGCCT GCGCCGTGCC CACGCTGGAG
GCCGAGCGGC TGGAGCGCCA GCGCGAAGAA CTTAATGCCC TGTACGTCGC GCTGACGCGG
GCGCGCCGCA CGCTGGCTAT TTCCAGCATC GCACCCTACC GCAGCGCGGA GCGCAGCTGG
TGGCAGCGCC TGAGCGACCT GGCCCAGCCG GCGGTGCCCG CAGGTGCAGC CGCCTTGGCG
GCGCCGCTTC CCGATGCGGT GACCGTGGCG GATGCTGTGT TTTATATCAA AGAACTGCCT
TTAGCCCCCG TAGAATATAG GCAAGTAGCT ATAAAAAGTG AAGCAAATTT GGGCGGAAGT
CGCGGTGGTG ATGACGCTAA CGCTGACGCT GACGCGCTCA GCGCCCGCCT GGGCAAGGCC
ATGCACCGGC TGCTGGAATG GGGCGACGCG ACGCCAGCCA ATACGGCCGC CTGTGCGCGT
GAATTTGCAC TCACGCCCGA GCAGGGCGCA CAAGCCGCCG CCATGGCCGC GCGTATCCTG
CAAGGCGAGG GCGCCTGGGC CTGGGACAAT ACAAGGCTGG CTTGGCAGGG CAATGAGATT
GAGTTGCTGT ACCAGGGCCA ATGCCTGCGC CTGGATCGCC TGGTGCAGCG CACGGACGCA
CAGCACGCGG GCCATTGGTG GGTGCTGGAC TACAAGTCGG CCCCGGCGCC CCACGAACAA
GCGGAGCTGC TGGCGCAGCT GCGCGACTAC CGGGCGGCCG TGCAGGCCAT TTATCCGGAT
GCGGTGGTCA AGGCCGCATT TTTGACCGCG CACGGCGCGT TGATCGAAGT GAATGAAGTG
AATTGGAACA GTGCATGA
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| Protein sequence | MPDSQPAPAY EHNGQLISAE AFYAIACDPR RSVAVEACAG AGKTWMLVSR IVRALLDGVD
ASSGELRVQP HEILAITFTK RAASEMRERL YQWLAEFAVA DRATLLKELT LRGVLDKNEL
HPPSVLPEQL SKLYQNILRS GRQVQVRTFH SWFAALLRSA PLAVLQQMEL PANYQLLEDD
TPAKALVWRR FYAALLRPKP AQVGGAELRG DAPDESCGFT LQFDYEAVVF DYGRAQTDKA
LQTALDKRTE FTLADAQGVV LRSVLPFGTQ FPEFAGLGTP DDFLRDQPQR WQILLDAAAA
LGRASAKTFA AKGVELEMAL SSGDLSAAFA ALLTDKDAPR KFSEKIAGIE AVREAQDLVL
RVVAARLQHA AWTYQQRMAR LTRALLKEFA ALKREHGWVD MNDVERAALV MLSDPVLCGW
VQERLDARIK HLLIDEFQDT NPLQWQALKS WLSGYAGTGG GASGGAGATA PRVFIVGDPK
QSIYRFRRAE PQVFKAAKAF VRDGLNGDLL SCDHTRRNAT GVIAVVNAVM TQAVQADGYE
GFRAHTTSAS ELGLVCKLPP IARPERLAGA ASSGDETEGG GTASAGWRDS LDTPRELPEE
TLRTLEARQA AHWIAQQLAS AETPDTEGRG LQAADVMVLS RKRAGLLPLQ LELRKLHIAA
QIGEKTNLID CCEVQDLVAL LDVLVSPRHD LSLARVLKSP LFDMTDAALV QLAQAVRAQS
QPPADGSWFD VLQKSELSTQ DGRGLAACLM RWKGWLDQWP PHDALQAIYF DGDVLARFAA
AAPASQRDAV LANLTALLGM SLQLDGGRFS TPYAFVRALK GGGVLAPAAV NPQAVRLLTV
HGAKGLEAQV VLLLDTDTPE RNADTMGVLI DWPGEAAWPS KFVFLASESQ PPACAVPTLE
AERLERQREE LNALYVALTR ARRTLAISSI APYRSAERSW WQRLSDLAQP AVPAGAAALA
APLPDAVTVA DAVFYIKELP LAPVEYRQVA IKSEANLGGS RGGDDANADA DALSARLGKA
MHRLLEWGDA TPANTAACAR EFALTPEQGA QAAAMAARIL QGEGAWAWDN TRLAWQGNEI
ELLYQGQCLR LDRLVQRTDA QHAGHWWVLD YKSAPAPHEQ AELLAQLRDY RAAVQAIYPD
AVVKAAFLTA HGALIEVNEV NWNSA
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