| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2604 |
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| Symbol | |
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| ID | 3962600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 2868402 |
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| End bp | 2869730 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637917422 |
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| Product | Type I secretion outer membrane protein, TolC |
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| Protein accession | YP_523851 |
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| Protein GI | 89901380 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACGT TTCGTCTTCT GCCCCTGTTA GTCGCGATTG GCACCACGAT GGCGCTGCCG
GTGCAGGCCC AGAGCCTGGT CGATTTGTAC CAATCGGCGC GGAGCTATGA CGCGACTTAC
CAATCGGCCA AGTCTCAATT TGATGCCACG CTGGCGCGGG CGGATCAGGC CAAGGCCCTG
ATTTTGCCCA CCGTCGGGCT TTCGCTCGGT GCATCGGCGA CCAATTTGGA CAGCACGTTG
CCAGCCCCGC TGCAGCCCAC CTCCAACTAC AACACCCAGA GCGCGACCGT CAGCGCTTCA
CAGCCCCTGT ACCGTCCGGC GAACTGGGCG GGTTACGAGC AGGGAATGAA GCAGGTCGAT
CTGGCCCAGG CGCAACTCGC TGCGGCCGAC CAGGACCTGA TCGTGCGTGT CAGCCAGGCT
TACTTTGACG TCCTGGCGGC CATGGACAGC CTGACCTTCG TCAGAGCCCA GAAAGCCGCC
GTGGGCGAGC AACTGGCGTC GGCCAAGCGC AACTTCGAAG TCGGCACCGC CACCATCACC
GACACCCGCG AGGCGCAAGC CCGCTTTGAC CTGGGGACGG CGCAGGAAAT CGCGGCCGAC
AACGATCTGC GGGTCAAGAA GCTTGCGCTC GACCAGTTGG TGGGCAAGGT TGACACCCAA
CCCCAACCCT TGGCGCAACC GCTGGCCCTG CCGACCCTGG TGCCCGACGA CATCACTGCC
TGGGTGGCGC AATCTCAAAA CAATCACCCG GCCATCAGGC AGACCCAGGT CGCGCTGGAT
GTGGCGCAAC TGGAAACCCA AAAAGCGCGG GCCGGCCATA AGCCAACACT TGATTTGACG
GCGGGTTACA ACATCACGCA AAACAATGGG ACCGCCAGCA CCTCGATGGA CTACCGCTCC
AATGCCGCCA CCGTCGGCCT GGCGTTCAAT CTGCCCCTGT TCGCCGGTTT TGCCATCCAG
AACCGGATCA AGGAAACGCT GGCATTGGAA GACAAGGCCC GCAGCGACCT GGAAGGCACC
AAACGCGCGG TCGACCAAGG CACACGCACC GCCTTCTTCG GTGTGCAGTC GGGTCAAGGC
CAGGTCAAGG CGCTGGAAGC CGCCGAGGCT TCCAGCCAGA GCGCGCTCGA CGCCAACAAG
CTGGGTTACC AAGTGGGCGT GCGCATCAAC ATCGACGTGC TCAACTCACA AAGCCAGTTG
TACGACACCA AGGCCCGGCT GGCCAAGGCG CGCTACGACG TGCTCGTGGG CGGATTGAGG
CTGCGCCAGG CCAGCGGCAC GCTGCAGGCC GAGGACTTGA ATAGCGTCAA CGCGCTACTG
GCCAAGTAA
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| Protein sequence | MKTFRLLPLL VAIGTTMALP VQAQSLVDLY QSARSYDATY QSAKSQFDAT LARADQAKAL
ILPTVGLSLG ASATNLDSTL PAPLQPTSNY NTQSATVSAS QPLYRPANWA GYEQGMKQVD
LAQAQLAAAD QDLIVRVSQA YFDVLAAMDS LTFVRAQKAA VGEQLASAKR NFEVGTATIT
DTREAQARFD LGTAQEIAAD NDLRVKKLAL DQLVGKVDTQ PQPLAQPLAL PTLVPDDITA
WVAQSQNNHP AIRQTQVALD VAQLETQKAR AGHKPTLDLT AGYNITQNNG TASTSMDYRS
NAATVGLAFN LPLFAGFAIQ NRIKETLALE DKARSDLEGT KRAVDQGTRT AFFGVQSGQG
QVKALEAAEA SSQSALDANK LGYQVGVRIN IDVLNSQSQL YDTKARLAKA RYDVLVGGLR
LRQASGTLQA EDLNSVNALL AK
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