Gene Rfer_2356 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_2356 
Symbol 
ID3961491 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp2595120 
End bp2596928 
Gene Length1809 bp 
Protein Length602 aa 
Translation table11 
GC content60% 
IMG OID637917173 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_523604 
Protein GI89901133 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAATC CTGATACCCC CAGCAGCAAT GGTCGTGAGT CTTCTGTCAC CCACGACGCG 
CCAAGTGCGG CGCAGCTGAT GCGTCGGCGA GCCGAAGACA TGGCCCTTGA AAAATTGGCG
CAATTGCCCC AGAGTCTGCA AGTGCTGTCA CCCGGGGAGA TGCAACAACT GATGCACGAG
CTGGCCGTGC ATCAGATCGA GCTGGAGATG CAAAACGACG AACTGCGCCG GGTACAACAG
GAACTGGAAA CCTCACGCGC ACGCTATTTC GACCTGTATG ACCTGGCCCC GGTGGGCTAC
ATCACCGTCA GTGACGCCGG GATGATCCTG GAGGCCAACC TCACCGCAGC CACCCTGCTG
GGCGTGCCGC GCAGCGCGCT GGTGAAGCGG CCGATCAGCC GCTTCATTGT CAAGTCGCAG
CAGGATATCT ACTACCAGTA CCGCAAACAG CTCGTGGAAA CGGGTCAAGC CCAGACCTGC
GAGCTGCAGG TGCTGCACAG TGAGGGCTCC GCGCTCTGGG TCAGTTTGGC CGCCACCGTC
GCGCAGGAAA CAGATGGCGC GACCATATTG CGCATCGTGC TGAACGACAT CTCCGAACGC
AAGTTGCTGG ATCAGTCGCT GCGGGAGACC AACGTCAAGC TGGAGAGTGC CCTGTTTCTG
GCCGACAAAG CCAACCTTGC CAAGTCGGAG TTTCTGTCGG GCATGAGCCA TGAGTTGCGC
TCACCACTGA ATGCGGTTTT GGGCTTTGCG CAGTTGATTG AGACGGGCAC GCCTGCGCCC
ACGCCGGGCC AGCAAGCCAG CCTGGAACAG ATTCTGCGGG GCGGCTGGTA TTTGCTGACG
CTGATCAACG AAATTCTTGA CCTGTCCCTG GTCGAGTCCG GCAAGCTGTC GCTGTCGATG
GAACCGGTCT TGCTGTCCGA AAAGTTTTCC GATTGCCGAG CCATGATCGA CCCGCAGGCG
CAAAAGGCCG GCATCCGTGT CAGCTTTGCG TCATTCGACA GTCCATGCTT TGTTGAGGCC
GACCGCACCC GCCTGAAGCA AGTGATCGTC AATTTGCTGA GCAATGCCAT CAAATACAAC
CGCGCTGGCG GCTCTGTCGA AGTGACCTGC AGCACGCCCG CAGCGGGACG TATCCGCATC
AGCGTGATTG ATACCGGACC GGGTTTGTCC GACAACAAAC TGGCCCAACT GTTCCAGCCC
TTCAATCGTC TCGGCCAGGA GGCTGGCACG CAGGAGGGCA CCGGCATCGG TCTGGTGGTT
TGCAAGCGGC TGGTTGAAAT GATGGGCGGT GAAATCGGTG TCCATAGCCG CGTTGGGATT
GGCAGCGAGT TCTGGTTTGA GCTCAAGCTC GCAGCGCCAC CGCCAACGGC CGTCAGCGGT
GAGGCGTCGG AGCTGGCACA GGCGCAGGTT CAGGATGAGG CCGAGGTACA CACCTTGCTG
TATATCGAGG ACAACCCCGC CAACATGGAA CTGGTCGAGC GGATCGTTGA GCGCCGTTCC
GAGCTGCGCT TGTTAAAGGC GGGCAATGGT TCGAGCGGTA TCGCGCTGGC GCGCATGCAT
CTGCCCCAGG TGATCCTGAT GGACATCAAT CTGCCTGGCA TCAATGGCTT TCAGGCCTTG
AAAACCCTGC GTGAGGACCC TGCAACCCAA CACATCCCGG TGCTGGCCCT GAGTGCCAAT
GCCATGCCCC ACGACATTCA AGCTGGCCTG GCGGCAGGCT TTCTTCGCTA CCTGACCAAG
CCCATCAAAA TCAAGGAGCT GATGCAGGCC TTCGATGTGG CGCTGGAAGC TGCAAAACTG
CCCCAATAA
 
Protein sequence
MSNPDTPSSN GRESSVTHDA PSAAQLMRRR AEDMALEKLA QLPQSLQVLS PGEMQQLMHE 
LAVHQIELEM QNDELRRVQQ ELETSRARYF DLYDLAPVGY ITVSDAGMIL EANLTAATLL
GVPRSALVKR PISRFIVKSQ QDIYYQYRKQ LVETGQAQTC ELQVLHSEGS ALWVSLAATV
AQETDGATIL RIVLNDISER KLLDQSLRET NVKLESALFL ADKANLAKSE FLSGMSHELR
SPLNAVLGFA QLIETGTPAP TPGQQASLEQ ILRGGWYLLT LINEILDLSL VESGKLSLSM
EPVLLSEKFS DCRAMIDPQA QKAGIRVSFA SFDSPCFVEA DRTRLKQVIV NLLSNAIKYN
RAGGSVEVTC STPAAGRIRI SVIDTGPGLS DNKLAQLFQP FNRLGQEAGT QEGTGIGLVV
CKRLVEMMGG EIGVHSRVGI GSEFWFELKL AAPPPTAVSG EASELAQAQV QDEAEVHTLL
YIEDNPANME LVERIVERRS ELRLLKAGNG SSGIALARMH LPQVILMDIN LPGINGFQAL
KTLREDPATQ HIPVLALSAN AMPHDIQAGL AAGFLRYLTK PIKIKELMQA FDVALEAAKL
PQ