| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2201 |
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| Symbol | |
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| ID | 3963148 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 2405385 |
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| End bp | 2407457 |
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| Gene Length | 2073 bp |
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| Protein Length | 690 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637917022 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_523456 |
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| Protein GI | 89900985 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.378461 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAACGA ACGATTTGTT CCCACCCGAG CCGCCGCTGC CTGATCCTGC CCATGTGGCG
CAGCTCAGGC GCGCGCTGCA TGAACACGCT CATCACTATT ACGTGGAGGA CGCGCCGACC
ATTCCGGATG CCGAGTACGA CCGCATGTTT CAGGAGTTGC AGGCGATCGA GGCACAACAT
CCGGAGCTGA TCACGCCAGA CTCTCCCACC CAGCGCGTCG GTGGGCGAGC TTTGGAACAG
TTTGCCAGCG TGCGCCACGC CGTGCCCATG CTGAGCATTC GCACTGAAAC CGACACCGAG
GCCAGTGGCG CGCGCAATTT TGACACTCGC GTGCGGCGGG AACTCGGCTT GGACGAGGCT
GCCCCCGCCG TGGCGTACGT GGCCGAACCC AAGTTTGACG GTCTGGCCAT GAACTTGCGT
TATGAATCTG GGATCCTGGT GCAGGCGGCT ACGCGCGGCG ACGGTGAAGT GGGGGAGGAC
GTGACCCAAA ATGTCCGCAC CATCGGTCAA ATTCCCCTGC GGCTGCCGGC TGACGCGCCG
TCGATCCTGG AGGTACGCGG CGAGGTGTAC ATGCGCCGCG ATGACTTTGA GAAGCTGAAC
GAACAGCAGC GAGCGCGCGG CCAAAAGACC TTCGTCAACC CGCGCAACGC CGCCGCCGGT
GCGGTGCGCC AGCTGGACCC GGCTATTGCC GCCCAGCGCC CCTTGAGCTT CTTTGCCTAT
GGTTTGGGTG AGGTCACACC AGAGCAGGCG GGTGGCCCCG CGTTTGGAAC ACATTATGAG
CTGTTGCAAG CCCTGAAAAC CTGGGGTTTT CCGGTGTCAG CCCTCGTGGG TCTTGCACAA
GGCGCTACTG AATTAGTAGC GTATTACGAA TCGATAGCTC GCCAGCGTGA CGCACTGCCG
TTTGACATTG ACGGCGTGGT CTACAAGGTC AACAGCCTGG CGCTGCAGCG CCGCATGGGC
TTTGTGACGC GCGAACCGCG CTGGGCGGTG GCGCACAAGT TCCCGGCCCA GGAGCAGTTC
ACCACCGTGC TGGACATCGA TGTGCAGGTG GGGCGCACCG GCAAGCTCAC GCCGGTGGCC
AAGCTGGCGC CGGTGTTTGT GGGCGGTGTC ACGGTCACCA ACGCCACCCT GCACAACGAA
GACGAGGCGC GACGCAAGGA TGTGCGCGTG GGCGACACGG TCATCGTGCG TCGTGCCGGC
GACGTGATTC CCGAAGTGGT TTCGGTGTTG CTGGACAAGC GTCAGCCCGG CGCAACAGAG
TTCACCATGC CGCGGCAGTG TCCGGTGTGC GGCAGCGCTG CCGTGCGCGA AGAAGGTGAA
GTTGACTACC GCTGTACCGG CGGGCTGTTC TGCAGCGCCC AACGCAAGCA GGCGATCCTG
CATTTTGCCC AGCGCCGGGC GGTCGAGGTG GAGGGGCTGG GCGAAAAACT GGTTGATCAG
CTGGTTGATG GCCACGTTAT TCGCATCCTG CCGGACCTGT ACCGGCTGGG CCTGACCGCG
CTGGCCAGTC TGGACCGCAT GGCCGACAAA TCGGCGCAGA ACATCCTGCA AGCCTTGGAA
AAATCGAAGC AGACCACGCT GCCGCGCTTT CTGTTCGGAT TGGGCATTCG GCATGTGGGC
GAGGCCACCG CCAAGGAACT GGCGCGGCAC TTTGGCAGCC TGGACGCCGT GATGGACGCT
TCTTTGGAAC AACTGCTGCA GGTCAACGAC ATTGGCCCCA TCGTGGCGCA AAGCTTGCGC
ACATTTTTCG ACCAGCCGCA TAACCGTGAG GTGGTGGAGC AACTGCGCGC CTGTGGTGTG
ACCTGGCAAG AGGGCCCTCC GGCGCCGGTC ACTCCGACGC CACTCTCAGG CAAAACCTTC
GTCATCACCG GCACCCTGCC CAGCATGAGC CGCGATGAGG CCAAAGACCT GATTGAGGCC
GCCGGCGGCA AGGTGGCGGG TTCGGTCAGC AAGAAAACCA CTTTTGTGGT GGCGGGCACT
GAGGCGGGCA GCAAGCTCAC CAAGGCGCAG GAACTGGGCG TTGCCGTGTT GGATGAAGCT
GGTTTGAAGG AGTTGCTTGA TGGCCATTCG TGA
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| Protein sequence | MATNDLFPPE PPLPDPAHVA QLRRALHEHA HHYYVEDAPT IPDAEYDRMF QELQAIEAQH
PELITPDSPT QRVGGRALEQ FASVRHAVPM LSIRTETDTE ASGARNFDTR VRRELGLDEA
APAVAYVAEP KFDGLAMNLR YESGILVQAA TRGDGEVGED VTQNVRTIGQ IPLRLPADAP
SILEVRGEVY MRRDDFEKLN EQQRARGQKT FVNPRNAAAG AVRQLDPAIA AQRPLSFFAY
GLGEVTPEQA GGPAFGTHYE LLQALKTWGF PVSALVGLAQ GATELVAYYE SIARQRDALP
FDIDGVVYKV NSLALQRRMG FVTREPRWAV AHKFPAQEQF TTVLDIDVQV GRTGKLTPVA
KLAPVFVGGV TVTNATLHNE DEARRKDVRV GDTVIVRRAG DVIPEVVSVL LDKRQPGATE
FTMPRQCPVC GSAAVREEGE VDYRCTGGLF CSAQRKQAIL HFAQRRAVEV EGLGEKLVDQ
LVDGHVIRIL PDLYRLGLTA LASLDRMADK SAQNILQALE KSKQTTLPRF LFGLGIRHVG
EATAKELARH FGSLDAVMDA SLEQLLQVND IGPIVAQSLR TFFDQPHNRE VVEQLRACGV
TWQEGPPAPV TPTPLSGKTF VITGTLPSMS RDEAKDLIEA AGGKVAGSVS KKTTFVVAGT
EAGSKLTKAQ ELGVAVLDEA GLKELLDGHS
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