| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2184 |
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| Symbol | |
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| ID | 3960984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2381930 |
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| End bp | 2383555 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637917005 |
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| Product | putative glutamate synthase (NADPH) small subunit |
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| Protein accession | YP_523439 |
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| Protein GI | 89900968 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases
[COG1144] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit |
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| TIGRFAM ID | [TIGR02179] 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.544077 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAAAC CATTTGCAAT CACGCTAGAT GTTGGCACCT CGCTGGCTAA CCACACGGGC
TCGTGGCGCA CCGAGCGGCC GGTCTATCTG AACCGCATCC CGCCCTGTAA CAGCCAGTGC
CCGGCGGGCG AAAACATCCA GGCCTGGCTG TTTCACGCCG AGTCGGGTGA TTATGAAAAA
GCCTGGCGCG AACTGGTCGA ACAAAATCCG TTTCCGGCCA TCATGGGGCG GGTTTGCTAT
CACACCTGCG AGGCAGCGTG CAATCGGGCC CAGCTTGACG CCCCTGTAGG TATCAATTCG
GTGGAACGGT TTCTGGGCGA TGAGGCGATT GCGCTCGGCT GGAAATTCGA ACGTCCCTCT
GTGGCATCTG GCAAGAAGGT GCTGGTAGTG GGTGCGGGAC CGTCTGGCTT GTCAGCGGCC
TATCAACTGG CACGCCTGGG TCATCAAGTC ACGGTGTTTG AAGCAGGCCC CATGCCAGGC
GGCATGATGC GTTTTGGTAT TCCCCAATAC CGTTTGCCGC GTCAGGTGCT CGACGCCGAG
GTGCAGCGCA TTGTCGATCT GGGTGTGAAC ATTGAGTACA ACACCAAAGT GAGCAACGTG
CTGGAAGCCA AAGAGCAAGG CGGCTTTGAG GCCGTCTTTC TGGCAGTCGG CGCCCACATT
GCCAAGCGCG CCTACATTCC AGCCGGTGAC TCAGCCAAGG TGCTCGATGC AGTCTCGGTG
CTGCGCTCCA TGGAGGGCGA AGACAAACCC ATGCTCGGTC GGCGGGTCAT TGTTTATGGC
GGGGGCAACA CGGCGATTGA CGTGGCGCGC ACCGCCAAGC GCCTGGGCGC CACCGAATCC
ATCATTGTCT ATCGGCGCAA TCGCGAAAAA ATGCCCGCCA GCGACCTGGA AGTGGAAGAC
GCGCTACAAG AAGGCGTGAT GATCAAGTGG TTGTCCACCA TCAAGCAAGC TGGTGAGTCA
TCCATTACGG TCGAAAAAAT GGCGCTCGAC GACAAGGGCT TTCCACAGCC CACTGGCGAG
TTTGAAACCC TGGAAGCGGA TTCTCTGGTA CTGGCGCTAG GTCAGGACGT GGATCTGTCG
CTGATTGAAG GGGTACCAGG TCTGGTCGTC AAGGACGGTG TGGTGGTGGT CGACGCCCAG
ATGATGACCG GTCACGCTGG TATTTTTGCC GGTGGCGACA TGATTCCTGC CGAGCGCAAC
GTCACGGTGG CGATTGGGCA CGGCAAAAAA GCAGCACGTA ACATCGATGC CTGGTTGCGC
GCTGAAGTCT ATGCCGCTGC ACCCAAGAGT GAGTTGGCCA GCTTTGACAA GCTCAACACC
TGGTACTACA GCGACGCACC CAAAACGGTG CGCCCGATGC TGGACATGAT CCGTCGCCAA
TCGACGTTTG AGGAAGTGCA AGGCGGTCTG GACGAAAGCA ATGCGCTGTT TGAGGCGCGC
CGCTGTCTCT CATGCGGAAA CTGCTTTGAA TGCGACAACT GCTACGGCGT GTGCCCGGAC
AATGCGGTCA TCAAGCACGG CCCGGGCAAG GGTTTTGATT TCAATTACGA CTACTGCAAG
GGCTGCGGCA TCTGCGTCTC AGAGTGCCCT TGCGGCGCGA TCAAGATGGT GCCAGAAGAT
ATTTGA
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| Protein sequence | MEKPFAITLD VGTSLANHTG SWRTERPVYL NRIPPCNSQC PAGENIQAWL FHAESGDYEK
AWRELVEQNP FPAIMGRVCY HTCEAACNRA QLDAPVGINS VERFLGDEAI ALGWKFERPS
VASGKKVLVV GAGPSGLSAA YQLARLGHQV TVFEAGPMPG GMMRFGIPQY RLPRQVLDAE
VQRIVDLGVN IEYNTKVSNV LEAKEQGGFE AVFLAVGAHI AKRAYIPAGD SAKVLDAVSV
LRSMEGEDKP MLGRRVIVYG GGNTAIDVAR TAKRLGATES IIVYRRNREK MPASDLEVED
ALQEGVMIKW LSTIKQAGES SITVEKMALD DKGFPQPTGE FETLEADSLV LALGQDVDLS
LIEGVPGLVV KDGVVVVDAQ MMTGHAGIFA GGDMIPAERN VTVAIGHGKK AARNIDAWLR
AEVYAAAPKS ELASFDKLNT WYYSDAPKTV RPMLDMIRRQ STFEEVQGGL DESNALFEAR
RCLSCGNCFE CDNCYGVCPD NAVIKHGPGK GFDFNYDYCK GCGICVSECP CGAIKMVPED
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