| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2160 |
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| Symbol | |
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| ID | 3961211 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2349969 |
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| End bp | 2353307 |
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| Gene Length | 3339 bp |
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| Protein Length | 1112 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637916980 |
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| Product | trehalose synthase-like |
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| Protein accession | YP_523415 |
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| Protein GI | 89900944 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases
[COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis |
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| TIGRFAM ID | [TIGR02456] trehalose synthase
[TIGR02457] trehalose synthase-fused probable maltokinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGCAC CTGCAACCAA TCTGACGCTC GAAACTGTCG AGATTGATGG CCGCGACGAT
CCGCTGTGGT ATCGCGACGC GGTCATCTAC CAGCTCAACG TCAAAGCGTT CTTCGACAGC
AACGACGACG GTATGGGTGA CTTCAAGGGT GTCGCAATCA AGCTCGACTA TGTCCGGGAC
CTGGGGGTCA ACACCATCTG GCTGATGCCC TTCTATCCCT CGCCGATGCG CGACGACGGC
TACGACATTG CGGAATATGA AGACGTTCAC CCACAATACG GCTCGCTCGA CGACTTTCGT
GAAATGCTGG CCGAGGCGCA CAAGCGCGAC TTGCGGGTGA TCATAGAGCT CGTCATGAAT
CACACATCAA GCGATCACCC GTGGTTCCAG GCAGCGCGAC GCTCGCCACC GGGCTCGCCC
GAGCGCGAGT TCTATGTCTG GAGCGATAGC GATCAGCTGT ACAAAGACAC GCGCATCATC
TTCACCGATA CCGAGACCTC CAACTGGACC TGGGACCCGG TGGCCAAGGC CTTCTTCTGG
CACCGCTTCT TCAGTCATCA GCCTGATCTG AATTTCGACA ATCCCAAAGT GCTCGAAGCA
ATCTTCAAGA CCATGCGATT CTGGCTCGAC ATGGGCGTTG ACGGTTTCCG CCTCGACGCC
ATTCCCTACC TCGTCGAGCG TGATGGCACC AGCAACGAGA ACCTGCCGGA GACGCACGCG
GTGATCAAAC AGCTGCGCGC GGCCATCGAC GCGCAATACA AGAACCGCTT CCTGCTGGCT
GAAGCCAATA TGTGGCCCGA GGACGTTCGA GAATACTTCG GCGACGGCGA CGAGTGCCAC
ATGGCCTACC ACTTCCCGCT GATGCCGCGC ATGTACATGG CCATCGCTCA GGAAGACCGT
CACCCGATTA TCGAAATCAT GCAGCAAACG CCGGAAATTC CCGACGGCTG CCAGTGGGCC
ATCTTTCTGC GCAACCACGA TGAACTGACC CTGGAAATGG TGACCAGCAA GGAACGGGAC
TACATGTACC GCATGTATGC GACTGACCCG CGGGCCCGGA TCAACCTGGG TATTCGCCGC
CGCCTCGCCC CGCTGATGGA GAACGACGCG GATCGCATCA AGCTGATGAA CGCAATGCTG
CTGTCGATGC CCGGCTCGCC CATCATCTAC TACGGTGACG AGATCGGCAT GGGCGACAAC
ATGTTCGTCG GCGACCGCAA CGGCGTGCGT ACACCGATGC AGTGGAGCCC CGACCGCAAC
GCCGGTTTCT CCCGTGCCGA CCCGCAACGC CTGTACCTGC AACCCATCAT GGATCCGATG
TACGGTTACG AGGCCCTCAA CGTCGAGGCC CAGGCGCGCG ACATCAGCTC GCTGCTCAAC
TGGACCAAAC GGATGCTCGC CGTGCGCAAA AGCAGCCGGG CCTTCGGCCG CGGCAAACGC
AGCTTCCTCA AGCCTGGCAA CCGCAAGATC CTGGCGTACC TGAGCACGTA CGAGGACGAC
ACCATCCTGG CAGTGTTCAA TCTGTCACGC GCGGCGCAGC CGGTGGAGCT GGAGCTGTCG
GTCTACAAGG GCCGCGTGCC GGTCGAGATG CTGGGACGCA CCTCCTTCCC GCCGATTGGC
GAGCTGCCCT ATCCGCTGAC GCTGCCGTCA TTCGGTTTCT TCTGGTTCCG GCTCGCCGCC
GACGCTGAAG TTCCGAGCTG GCATCAGGAG CATGTGGCAC TGCAAGACCG CCCGACGCTG
GTGCTGTTTG ATGGCTGGAC CAGCTTCTTT CGCGATCGCG TGATGCCGTG GCGAATCGGA
ATGGCCGACC GCATGCGCAC GCAATTCGAA ACTGACACGC TGCCGCGTCA TATTGAGATC
CAGCGTTGGT ACGCCTCCAA AGGCACGCCC ATTGAACGCG CACGGCTGGT CGATCATGCA
GTGTGGGAGG CCGGCAACTT CAGCTGGATG CTGCCCATTC TGAAACTGGA CGGACCCGTC
GGGGAATCGA CCTATTTCAT GCCGCTGGCA CTGGCGTGGG AGGAGCGCGA CGAAGAGCGC
ATCGCCAACC TCGCGCCCGC TGCGCTGGCC AAGGTACGCC AGCAGGCCAA CGTTGGCATC
ATGGGCGATG CTTTCTACGA CCCGGCCTTC TGCCGCGCCT TGGTCCAGGC GATCGGCGCC
GACATGGAAA TTGCCACTGC GGCCGGACGT CTGCAGTTCA AACCCACGAC GGTGTTCAAA
AACTTTACCT CAGACATCGC CGCGCTAACG GTATCGCGTC CGAGCACGAC GAGCAGCAAC
ACGGTTGTGA CACTGGATGA CACGCTTTTT CTCAAGGGTT ACCGTCGTCT GCGCCAGGGC
CTGAATCCCG AACTGGAGAT GGGTCGCTTC CTGACTGAAG TCGTACACTT CCCGAACTGC
GTTCCGGTGC TGGGCGCACT CGAATACTTC ATGAGCGATG GCAACGTCAT GACGCTGGCC
CTGGTCCAGG GTTACGTGGC CAACCAAGGG GACGGCTGGG ACTACACATC ACGTTACGTC
GAGCGCTTCC TGGAAGAGCT GCGCATCTCG GGCGAAGCCA ATGCCACCGC AGGCGAAACA
CATGGCGGCT TTCTGGCTTT TGCCGCCACA CTTGGCCAGC GCACTGCGGA GCTTCACCTC
GCACTGACGC AACACACAGC AGAGCCAGCC TTCGACCCCG AACCTCTCTT GTCGAGAGAT
GTCATCGCGT TCAAGGACCG GGCGGCTAGA GAGGCCACCG CCACATTGTC ACTGCTGCGC
GAGCGCCAGG CGCAATTGCC CGCAGCCGCC CAAGAGGTAG CCCAAGCCCT GCTGTTGCAA
CAGGACCGCC TGCAGACTCG CATCGCCGCC GTCAAGACCG AGGGGAAAGT CAGCATCAAA
ACACGCTACC ACGGCGACTA CCATTTGGGC CAGGTCCTCG TAACCGGCAA CGATTTCGTG
ATTATCGACT TCGAGGGTGA GCCAGCCCGC AGCTTTGAAG AACGCCGCAC CAAGAGTTCA
CCTTTGCGCG ACGTGGCGGG CATGCTGCGG TCTTTCAATT ATGCACACTG GTCAGCGCTG
CGGCGCGTGG CACAAAATAC TGCCGAGATT GACCAACTGG AACCCGCAGT GCGCGAATGG
GAGCGCAGCA CCCGCGAGGC TTTCCTGGCG GCCTACGAGC ACGTCATGAT GTCGGTCGAA
TTGGCGCAGC CAGTTGACCT GGACCTGCTC GCATTGTTCG AACTGGAAAA GGCACTTTAC
GAACTCCGAT ACGAGCTCAA TAATCGCATC GACTGGATCC AGGTGCCTTT GCAAGGTATC
CTGGCCCTGA TTGATCCTGA TACGGGCCTG ACACGCTGA
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| Protein sequence | MNAPATNLTL ETVEIDGRDD PLWYRDAVIY QLNVKAFFDS NDDGMGDFKG VAIKLDYVRD
LGVNTIWLMP FYPSPMRDDG YDIAEYEDVH PQYGSLDDFR EMLAEAHKRD LRVIIELVMN
HTSSDHPWFQ AARRSPPGSP EREFYVWSDS DQLYKDTRII FTDTETSNWT WDPVAKAFFW
HRFFSHQPDL NFDNPKVLEA IFKTMRFWLD MGVDGFRLDA IPYLVERDGT SNENLPETHA
VIKQLRAAID AQYKNRFLLA EANMWPEDVR EYFGDGDECH MAYHFPLMPR MYMAIAQEDR
HPIIEIMQQT PEIPDGCQWA IFLRNHDELT LEMVTSKERD YMYRMYATDP RARINLGIRR
RLAPLMENDA DRIKLMNAML LSMPGSPIIY YGDEIGMGDN MFVGDRNGVR TPMQWSPDRN
AGFSRADPQR LYLQPIMDPM YGYEALNVEA QARDISSLLN WTKRMLAVRK SSRAFGRGKR
SFLKPGNRKI LAYLSTYEDD TILAVFNLSR AAQPVELELS VYKGRVPVEM LGRTSFPPIG
ELPYPLTLPS FGFFWFRLAA DAEVPSWHQE HVALQDRPTL VLFDGWTSFF RDRVMPWRIG
MADRMRTQFE TDTLPRHIEI QRWYASKGTP IERARLVDHA VWEAGNFSWM LPILKLDGPV
GESTYFMPLA LAWEERDEER IANLAPAALA KVRQQANVGI MGDAFYDPAF CRALVQAIGA
DMEIATAAGR LQFKPTTVFK NFTSDIAALT VSRPSTTSSN TVVTLDDTLF LKGYRRLRQG
LNPELEMGRF LTEVVHFPNC VPVLGALEYF MSDGNVMTLA LVQGYVANQG DGWDYTSRYV
ERFLEELRIS GEANATAGET HGGFLAFAAT LGQRTAELHL ALTQHTAEPA FDPEPLLSRD
VIAFKDRAAR EATATLSLLR ERQAQLPAAA QEVAQALLLQ QDRLQTRIAA VKTEGKVSIK
TRYHGDYHLG QVLVTGNDFV IIDFEGEPAR SFEERRTKSS PLRDVAGMLR SFNYAHWSAL
RRVAQNTAEI DQLEPAVREW ERSTREAFLA AYEHVMMSVE LAQPVDLDLL ALFELEKALY
ELRYELNNRI DWIQVPLQGI LALIDPDTGL TR
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