| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2126 |
|---|
| Symbol | |
|---|
| ID | 3962078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 2302559 |
|---|
| End bp | 2304847 |
|---|
| Gene Length | 2289 bp |
|---|
| Protein Length | 762 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637916946 |
|---|
| Product | lysine decarboxylase |
|---|
| Protein accession | YP_523381 |
|---|
| Protein GI | 89900910 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTC GCTTTCCCAT CATCATCATT GACGAGGATT TTCGCTCTGA AAACGCCTCC
GGCCTGGGTA TACGGGCGCT GGCCCAAGCC ATCGAGTCAG AAGGCCTGGA AGTGCTGGGT
GTGACCAGTT ATGGTGACCT GAGCCAGTTT GCGCAGCAGC AAAGCCGCGC CAGTGCCTTC
ATCATGTCCA TTGATGACGA GGAATTTACC CCCGGTCCGG ACCTCGACCC GGCCGTGGTG
AACTTGCGCC ACTTCATCGA AGAGGTGCGT CGTAAAAATC TTGATGTGCC AATCTATATC
TACGGCGAGA CCAAGACCTC ACGCCATTTG CCCAATGACA TCCTGCGCGA GCTGCATGGT
TTCATTCACA TGTTTGAGGA CACGCCCGAG TTCGTGGCGC GTCACATCAT TCGCGAAGCC
AAAGCTTATC TGGAGAGCGT GCAGCCGCCG TTTTTCAAGG CCTTGTTGGA CTACGCCGAG
AATGGTTCCT ACTCCTGGCA CTGCCCGGGG CACTCCGGTG GCGTCGCCTT CCTGAAAAGC
CCGGTCGGTC AGATGTACCA CCAGTTTTAT GGCGAGAACA TGCTGCGTGC CGACGTCTGC
AACGCAGTGG AAGAACTGGG CCAACTGCTG GACCATGATG GTGCGATTGG CAAGAGCGAG
CGTAATGCGG CGCGCATCTT CAATGCCGAC CACTGCTTTT TTGTCACCAA CGGCACCAGT
ACCAGCAACA AGATGGTGTG GCACCACACG GTGGCGCCCA ATGACGTGGT GGTGGTGGAC
CGCAATTGCC ATGTGTCCAT CCTGCACGCC ATCATCATGA CCGGGGCCAT TCCGGTGTTT
TTGAAGCCCA CGCGCAACCA CTTCGGCATC ATCGGGCCGA TTCCCAAGAG CGAGTTTGAG
CCAGCGTCCA TCAAGGCAAA AATCAAGGCC AACCCCTTGA TCAAGGAGCA TCTGCCCGAC
GTGGACCTGA GCCGGATCAA GCCGCGCGTG CTGACGCTGA CCCAGTCCAC CTACGACGGT
GTGCTGTACA ACACCGAGAC GGTCAAAAAC ATGCTGGACG GCTATGTGGA GAACATCCAC
TTTGACGAAG CCTGGTTGCC ACATGCGGCA TTTCACCCGT TTTACGGCAC CTACCATGCG
ATGGGTAAAA AGCGCTCGCG CCCCAAGCAC GCCATGGTCT ATGCCACGCA ATCGATCCAC
AAGCTGCTGG CCGGCATCAG CCAGGCCAGC CAGGTGCTGG TGCAGGATTC GCAAACCGTC
AAGCTCGACA AGCACCTGTT CAACGACGCG TATCTGATGC ACACCTCTAC CTCCCCGCAG
TACAGCATCA TTGCCAGTTG CGACGTGGCT GCCGCCATGA TGGAGCCACC CGGCGGCACC
GCGCTGGTGG AAGAAAGCAT CGCTGAAGCG CTCGATTTCC GCCGTGCCAT GCGCAAGATC
GACGAAGAAT ACGGCACCGA CTGGTGGTTC AAGGTGTGGG GACCTGAAAA ACTGGTGGAA
GAAGGCATTG GCCGCGCCGA CAGCTGGATC ATCAAAGGCG AGTCAGCCAA AGCCAAGGCG
GGTGTCAACT GGCACGGTTT TGGCAAAATG GCCACCGGCT TCAACATGCT CGACCCGATC
AAATCGACGG TGGTCACGCC CGGCATGGAC TTGAACGGCA AGTTTGCCAA GACCGGCATT
CCGGCCAGTA TCGTCACCAA GTTCCTCGCC GAACACGGCG TGGTGGTCGA GAAAACCGGG
CTTTACAGCT TTTTCATCAT GTTCACCATC GGCATCACCA AGGGCCGCTG GAACAGCATG
TTGACCGCCT TGCAGCAGTT CAAGGACGAC TACGCCAAGA ACCAGCCGAT GTGGCGCATC
CTGCCCGAGT TTTGCCAGAA GTACCCCAAA TACGAAACCA TGGGGCTGGC TGACCTGTGC
CAGCACGTGC ACCAGCTCTA CGCCAAATAT GACATTGCGC GCCTGACGAC CGACATGTAT
TTAAGTGACC TGGCGCCGGC CATGAAGCCC AGCGATGCTT ATGCCCACAT TGCGCTACGC
AAGACCGAGC GCGTGGCGAT TGATGATCTG GAAGGTCGCA TCACGGTTGG CCTGGTCACA
CCTTACCCGC CCGGCATTCC CTTGCTGATA CCGGGTGAAG TGTTCAACAA GAAAATCGTG
GACTACCTGA AATTTGCCCG CGAGTTCAAT ACCCAGTGCC CCGGTTTTGA AACCGACATT
CATGGACTGG TGGAAGAACA GGAGGCTGAC GGGCAGCGGC ACTATTACGC GGATTGCGTC
AAGTCCTGA
|
|---|
| Protein sequence | MKFRFPIIII DEDFRSENAS GLGIRALAQA IESEGLEVLG VTSYGDLSQF AQQQSRASAF
IMSIDDEEFT PGPDLDPAVV NLRHFIEEVR RKNLDVPIYI YGETKTSRHL PNDILRELHG
FIHMFEDTPE FVARHIIREA KAYLESVQPP FFKALLDYAE NGSYSWHCPG HSGGVAFLKS
PVGQMYHQFY GENMLRADVC NAVEELGQLL DHDGAIGKSE RNAARIFNAD HCFFVTNGTS
TSNKMVWHHT VAPNDVVVVD RNCHVSILHA IIMTGAIPVF LKPTRNHFGI IGPIPKSEFE
PASIKAKIKA NPLIKEHLPD VDLSRIKPRV LTLTQSTYDG VLYNTETVKN MLDGYVENIH
FDEAWLPHAA FHPFYGTYHA MGKKRSRPKH AMVYATQSIH KLLAGISQAS QVLVQDSQTV
KLDKHLFNDA YLMHTSTSPQ YSIIASCDVA AAMMEPPGGT ALVEESIAEA LDFRRAMRKI
DEEYGTDWWF KVWGPEKLVE EGIGRADSWI IKGESAKAKA GVNWHGFGKM ATGFNMLDPI
KSTVVTPGMD LNGKFAKTGI PASIVTKFLA EHGVVVEKTG LYSFFIMFTI GITKGRWNSM
LTALQQFKDD YAKNQPMWRI LPEFCQKYPK YETMGLADLC QHVHQLYAKY DIARLTTDMY
LSDLAPAMKP SDAYAHIALR KTERVAIDDL EGRITVGLVT PYPPGIPLLI PGEVFNKKIV
DYLKFAREFN TQCPGFETDI HGLVEEQEAD GQRHYYADCV KS
|
|---|
| |