| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2082 |
|---|
| Symbol | |
|---|
| ID | 3961033 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 2256402 |
|---|
| End bp | 2257877 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637916902 |
|---|
| Product | ribonuclease |
|---|
| Protein accession | YP_523338 |
|---|
| Protein GI | 89900867 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGAAG ACATTTTGAT CAACTGGTCG CCGCAGGAAA CCCGGGTTGC CATTGTTGAA
AACGGCGCGC TGCAGGAACT GCTCGTTGAG CGCACGCTGG AGCGTGGGCT GGTCGGCAAT
GTCTATCTGG GCAAGGTCGT TCGCGTGCTC CCGGGCATGC AGTCGGCGTT TATCGACATC
GGGCTGGAGC GGGCTGCGTT TTTGCATGTG GCCGATGTCT GGCACCGCCA GCCCGAGGGT
GAACCCCCGA GCATGGTGCG CAACACGCAG CCTCAGATCC CGATTGAAAA GCAGGTGTTT
GAGGGCCAGG TGCTGCTGGT GCAGGTCATC AAGGACCCGA TTGGCACCAA AGGCGCGCGG
CTGTCCACGC AGATCAGCAT TGCCGGGCGC ATGCTGGTTT TCTTGCCACA GGATGACCAT
GTCGGGGTGT CGCAAAAAAT CCCGCAAAAC CAGCGCGACG AACTGCGCAC GCGCCTGCAG
CAGCTGGTGG GCACCGAAGG TGGCGGATTC ATTTTGCGCA CCAATGGAGA AGACGCCTCG
GACCTGGAGC TGTCGGACGA CATCGGTTAT TTGCGTAAAG CCTGGGCCCG CATCAAGGGT
GCCTCGGTAC GGCTGCCGCC TCTGTCGTTG TTGCACCAGG ACTTGAATTT GCTGCAACGG
GTGCTGCGGG ACCTGGTGTG TGAAAACACC CAGACCATCA AGGTCGATTC ACGGGAACAG
TTTGAAGCGC TCAAGGCCTT TGGTCTTGAA TTCATGCCGG CCGCCGCCGA GAAGTTGCAG
CACTACAAGG GTGAGCGGCC CATCTTTGAC CTGTATGCCA TTGACGAAGA AATTGCCAAG
GCGCTGGGGC GTCGGGTGGA TCTGAAGTCC GGCGGTTATT TGATCGTGGA CCAGACCGAA
GCCTTGACCA CGGTGGATGT GAACACGGGC GGTTTTGTTG GCGCGCGCAA TTTTGACGAC
ACCATTTTCA AGACCAACCT GGAAGCCGCT CAGGCGATTG CACGGCAACT CCGATTGCGC
AACCTGGGCG GCATCATCAT CGTGGACTTC ATTGACATGG TGCGCGAAGA CCATCGCGAG
GCGGTGTTGG CTGAAATCCG CAAGCAGCTG TCGCGCGACC GTGTCAAGAC CATGGCCGGT
GGTTTTTCGC AGCTCGGCCT GGTCGAGATG ACGCGCAAAC GCACCCGTGA ATCGCTGGCT
CATATGCTGT GCGAACCGTG CCCCACCTGC GAAGGCAAAG GCATCGTCAA GACTGCGCGC
ACAGTGGCCT ACAACATCTT TCGCGAGATT TTGCGCGAGG CACGCCAGTT CAACCCGCGC
GAATTTCGGG TGATTGCTTC CCCCAAAGTG ATTGAGCTGT TTCTGGATGA AGAAAGCCAG
CACCTGGCGG GCTTGAGTGA GTTCATTGGC AAGCCGGTGT CGCTGCAGAG CGAGAGCGCC
ATGGGGCAGG AGCAGTACGA TATTGTGTTG CTTTGA
|
|---|
| Protein sequence | MQEDILINWS PQETRVAIVE NGALQELLVE RTLERGLVGN VYLGKVVRVL PGMQSAFIDI
GLERAAFLHV ADVWHRQPEG EPPSMVRNTQ PQIPIEKQVF EGQVLLVQVI KDPIGTKGAR
LSTQISIAGR MLVFLPQDDH VGVSQKIPQN QRDELRTRLQ QLVGTEGGGF ILRTNGEDAS
DLELSDDIGY LRKAWARIKG ASVRLPPLSL LHQDLNLLQR VLRDLVCENT QTIKVDSREQ
FEALKAFGLE FMPAAAEKLQ HYKGERPIFD LYAIDEEIAK ALGRRVDLKS GGYLIVDQTE
ALTTVDVNTG GFVGARNFDD TIFKTNLEAA QAIARQLRLR NLGGIIIVDF IDMVREDHRE
AVLAEIRKQL SRDRVKTMAG GFSQLGLVEM TRKRTRESLA HMLCEPCPTC EGKGIVKTAR
TVAYNIFREI LREARQFNPR EFRVIASPKV IELFLDEESQ HLAGLSEFIG KPVSLQSESA
MGQEQYDIVL L
|
|---|
| |