| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2066 |
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| Symbol | |
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| ID | 3962113 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2239495 |
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| End bp | 2240781 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637916886 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_523322 |
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| Protein GI | 89900851 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.567226 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCTTAC CACGCGCCCG ACTTTCCATC GCCACCCCCA TCCCCCACCG GTCGCCATTG
CGCGGCCACC TTGCCCTGAC CTCTCTGAGT CTTGCGGCCC TGCTGGCGGG CTGCGGCCAA
AGCAGTACCG CACCGGCGGG CCCCGCGGGC GGTATGCCGC CCGCCGAGGT GGGCGTGGTC
ACCGTCACCC CGGGTGACGT GGGTTTGATC ACCGAACTGC CCGGCCGACT GGAGGCCTCA
CGCGTGGCCC AGGTGCGGGC ACGGGCCGCC GGCATTCTGC AAAAACGGCT GTTTGTCGAG
GGCAGCGACG TGAAAGCCGG TCAGGCTTTG TTCGAAATTG ACGCCAGCCC CTACCAGGCC
GCTTTTGCCA GTGCCCAGGG CAGCCTGGCC AAAGCCGAAG CCAACCTGAT GCAAGCCAGT
GCGCAAGCCG AGCGTTACAA ACCCCTGGTC GAAGCCAAAG CCATCAGTCA ACAGGAGTAC
GTAAACGCCC AGGCGGCAAG CAAACAGGCT GAGGCCGACG TCGCCATCGG CAAAGCCGCG
GTGCAGACGG CACGCATCAA CCTGAACTAC GCCGCCGTCA CCGCTCCGAT CTCGGGCAGT
ATCGGCCGCT CACTGGTGAC CGAAGGTGCG CTGGTGGGCC AGGGGGAAGC GACACCGCTG
GCGGTGATCC AACAAATCGA CCCCATGTAT GTGAACTTCA CGCAGTCGGC CTCCGAAGTG
CTCAAGCTCA AGGCCGGTTT GACCAACGGC CAATACAAGC AGGCGGGCAA AGGTGCCGCC
AGCGTCACCG TTATCCTGGA AGACGGAAGT ACTTACAAAC ACACAGGCCG CCTGCTGTTT
ACCGACTTGA CGGTGGATGC CACCAGCGGT CAAGTCACCT TGCGCGCTGA AGTTCCCAAC
CCCGAGAAAG CACTCTTGCC CGGCCTGTAC GTGCGCGTCA AGCTGGAACA GGCGCAAGTC
AACGGCGCCA TTTTGCTGCC GCAACAAGCC GTCACACGGG GCGAGCAGGG CGACACCGTC
ATGGTCGTTG GCGCCGACAA CCACCTCACG CCGCGCCCGA TCAAACTGGG TTCTGCCCAA
GACAACAAAT GGGTTGTACT CGAAGGTCTC AAGGCTGGTG AACAGGTGAT GGTCGAAGGC
TTCCAGAAGC TGCCACGCGG CAAACCGGGT GATCCCATCG TCGTCAAGCC CGTGCCATGG
CAATCGCAGG GCGGCAAGCC CGCAAGCGCC GCCAGCGTGG CTGCACCGGC AGCCCCGGCC
AGCGCAGCAT CCAGCGCTGC CCGCTAA
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| Protein sequence | MSLPRARLSI ATPIPHRSPL RGHLALTSLS LAALLAGCGQ SSTAPAGPAG GMPPAEVGVV
TVTPGDVGLI TELPGRLEAS RVAQVRARAA GILQKRLFVE GSDVKAGQAL FEIDASPYQA
AFASAQGSLA KAEANLMQAS AQAERYKPLV EAKAISQQEY VNAQAASKQA EADVAIGKAA
VQTARINLNY AAVTAPISGS IGRSLVTEGA LVGQGEATPL AVIQQIDPMY VNFTQSASEV
LKLKAGLTNG QYKQAGKGAA SVTVILEDGS TYKHTGRLLF TDLTVDATSG QVTLRAEVPN
PEKALLPGLY VRVKLEQAQV NGAILLPQQA VTRGEQGDTV MVVGADNHLT PRPIKLGSAQ
DNKWVVLEGL KAGEQVMVEG FQKLPRGKPG DPIVVKPVPW QSQGGKPASA ASVAAPAAPA
SAASSAAR
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