| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2047 |
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| Symbol | |
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| ID | 3963185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2215210 |
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| End bp | 2216439 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637916867 |
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| Product | succinyldiaminopimelate transaminase |
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| Protein accession | YP_523303 |
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| Protein GI | 89900832 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
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| TIGRFAM ID | [TIGR03538] succinyldiaminopimelate transaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCCAC TGCTCACTCT TTTGCAGCCC TACCCGTTTG AGCGGCTGCG GCAACTTTTC
TCCGGCGTCA CCCCCAATCC AGCCTTGCGG CCGATCAGCC TCGGGCTGGG GGAACCCAAA
CACGCCACCC CCGCCTTCAT TCAACAAGCC ATGATCGAGG CTATTGGGCG CACGCCCAGT
GGCCTGGCCA GCTACCCGGC CACGCAGGGC GAGCCCGCCC TGCGCGAAGC CTTTGCCCAG
TGGCTGAAGA AACGCTATGC CATCCACGCC GACCCGGCCA CGCAGATGCT GCCGGTGACC
GGCTCGCGCG AAGCCTTGTT CGCCCTGACC CAAACCGTGG TTGACCCCGG CGCTCGCCAG
CTTGGGCATG AAAAACCGCT GGTGGTCTGC CCCAATCCGT TTTACCAAAT CTACGAAGGC
GCCACGCTGC TGGCCGGTGC CCAGCCCTAC TACGTCGCCA GCGACCCGGC GCGTAACTTT
GCACCCGACT GGGCCGTTGT GCCAGCTAGC GTGTGGGCGC GCACCCAACT GCTGATCGTC
TGTTCGCCGG GCAACCCGAC CGGCGCGGTG ATGCCCTTGT CGGAGTGGCA AATGCTGTTT
GAACTGAGCG ACCGGCACGG CTTTGTCATT GGCTCCGACG AGTGCTACAG CGAGATTTAT
TTCCACGACG ACGCCCAGGG TGGACCGCCG CTGGGCGGCA TGGAAGCCGC GGCGCAACTC
GGCCGGCTGG ACTTCAAGAA CCTGATTTCA CTCACCAGCC TGTCCAAACG CAGCAATGTG
CCCGGCATGC GCAGCGGTTT TGTGGCCGGT GACGCCGCCA TCATCAAGCA GTTTTTGCTC
TACCGCACGT ACCACGGCTG CGCCATGAGC CCGGTGGTGC AAGCCGCCAG CACGGCGGCC
TGGCGCGATG AGCAGCATGT AGTCGAGAAC CGGGCGCTGT ACCGCAGCAA ATTCGCCCAG
GTCACCCCCT TGCTGGCCGA GGTGCTGGAC GTGGCGCTGC CCGACGCCGG CTTTTATTTA
TGGGCCAAAG TGAAGGGCAA TGACACCGAC TTTGCCCGCG ACTTGTTCGC TCTTTACAAT
GTGACGGTTT TACCCGGCTC CTACCTGGCG CGTGAAGCGC AAGGCGGCAA CCCCGGTGCC
GGGCGTATCC GCATGGCGCT GGTGGCCGAA ACCGCCGAAT GCGTGGAAGC CGCCCGGCGC
ATCGCGCAAT TTGTCAAATC CAGAACCTGA
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| Protein sequence | MNPLLTLLQP YPFERLRQLF SGVTPNPALR PISLGLGEPK HATPAFIQQA MIEAIGRTPS
GLASYPATQG EPALREAFAQ WLKKRYAIHA DPATQMLPVT GSREALFALT QTVVDPGARQ
LGHEKPLVVC PNPFYQIYEG ATLLAGAQPY YVASDPARNF APDWAVVPAS VWARTQLLIV
CSPGNPTGAV MPLSEWQMLF ELSDRHGFVI GSDECYSEIY FHDDAQGGPP LGGMEAAAQL
GRLDFKNLIS LTSLSKRSNV PGMRSGFVAG DAAIIKQFLL YRTYHGCAMS PVVQAASTAA
WRDEQHVVEN RALYRSKFAQ VTPLLAEVLD VALPDAGFYL WAKVKGNDTD FARDLFALYN
VTVLPGSYLA REAQGGNPGA GRIRMALVAE TAECVEAARR IAQFVKSRT
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