Gene Rfer_2030 details

Gene Information

• Locus tag: Rfer_2030
• ID: 3963168
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 2190042
• End bp: 2191838
• Gene Length: 1797 bp
• Protein Length: 598 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637916850
• Product: diguanylate cyclase/phosphodiesterase
• Protein accession: YP_523286
• Protein GI: 89900815
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain; [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.149487
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTGACGC GCTCCTATGC CGTGCGGCGT GGTTGCGGGC CGCTGGCTGA CCTGATGCGC 
GGCACCGGGC TGTACCCGGT CTATCAGCCC ATTGTGTCGC TGGAGGGTGG TGCCATTTAT 
TCCCATGAGG CCCTGATTCG CGGGCCACAA GGCACCTCAT TGCATACGCC CGATATGTTG 
TTGGCAGCAG CGGCACATGA GAGGCTGAAC TTCGAGTTTG AAACCCTGTG TGTCATTGCC 
GCACTGGATC AGTGGGGCAC GCTGCTTCAA AATGGGCGAC TGTTTGTCAA TATCAGCGCG 
CAGGTGCTGG TTCAGGTCTT GAAACAATGC GGGCGTGATG CCCTGATCGA GATGGTCAGC 
GGCTTGGGTG TTTTGCCACG CCGCTTGGTG CTGGAGATCA CCGAGTATGA GCGGGTGACC 
GACATGGATT ATTTCGCCAG CGTCGTGGGC GAGCTGCGTG CGATCGGCGT CTCCATCGCA 
CTGGACGATT TTGGCGATGG TCGCTCGAGT CTGCGCCTGT GGTCGCAACT CAAGCCCGAG 
ATCGTGAAGA TCGACAAATA CTTTACCAAG GACCTCAGCC TGCACGCCGA CAAAGTCAAG 
ACGATTCAGG CTTTGCAACA AATTGCCGCC ATCTTTGATA CCGCCCTGGT CGCCGAAGGC 
ATTGAGACCG AGGACGACTT GCGCGTTCTG CGCGATCTCG GCATTTCTTA TGGCCAAGGT 
TATCTTCTGG GGCGCCCGGC CGCACTGCCG CGGGAGCAGA TTGAAGAGCC GGCAATGGCC 
GTGATGCAGG ACCGTCGGGT CGCCGTGTTC CCCGAGTTGC GGCGGGCGTC CAACGCGGGC 
TCCTTAAAAC GCCTGTTGGT GCTGGAGGCG CCTGCTGTCG GCTTGGATGC GACCAACGAT 
GAATTGGCGT CGCTGTTTAT GACGCACACC AAGCTGCATG CCGCGGCAGT TGTTGACGGC 
ACCCGCCCGG TGGGGATCAT CAACCGTTCA CGCTTTATGA ACGAATACAG CAGGCTGTAT 
TACCGTGAGG TATGGGGCCG CAAGCCGTGC CTGGTTCATG CCAATCTGGA GCCCCGCTTG 
ATCGAGCGCG ACCACAATGT TGACGAGTTG ATCGGCATTC TCACGTCGGA CGACCAACGT 
TACCTCGCCG ATGGATTTGT CGTGACGGAC AACGGCCGCT ATGCTGGCTT GGGCACCGGC 
GATCAGCTGG TTCGCTCAGT CACGGAGACA CGCATTGAAG CGGCCCGCCA TGCCAACCCA 
CTGACTTTTT TGCCGGGCAA TATTCCGATC AGTCAACATA TCGAGCGGCT CTTGAACAGT 
GGCGTTGATT TTGTTGCCTG CTACGCCGAT CTGAATAATT TCAAACCCTT TAACGACCAA 
TATGGTTATT GGCGCGGCGA CGAAATGATT CGTCTGGTGG CCCGGCTCGC CCAGGCGCAT 
TGTGATCCAC GGCGTGATTT TGTCGGGCAT GTTGGTGGCG ACGACTTCAT CATCCTGTAT 
CAGAGTGATG ACTGGCGGGT GCAATGCGAG CAATTCATCG CTGAATTTGC CAAGCGCGCG 
GTGGAGCTGT TTGATCCGTC GGCGCGTGCG GCTGGCGGTA TTGAAGCTGA AGATCGCTTT 
GGAGTACCCC GATTTTTCCC TTTGACCACC ATCTCGATCG GTGCCGTCAA AGTCGCGCGC 
GATGAGTATG CCAATGCCGA GCAGGTCGCG TCGGAGGCGG CACGGGCCAA GCACGACGCC 
AAGACCCATA ACGTGGGACT GCTGGTGCGC GATACCCTCG ACTTCAGCAC TCGCTGA 

 

Protein sequence

MVTRSYAVRR GCGPLADLMR GTGLYPVYQP IVSLEGGAIY SHEALIRGPQ GTSLHTPDML 
LAAAAHERLN FEFETLCVIA ALDQWGTLLQ NGRLFVNISA QVLVQVLKQC GRDALIEMVS 
GLGVLPRRLV LEITEYERVT DMDYFASVVG ELRAIGVSIA LDDFGDGRSS LRLWSQLKPE 
IVKIDKYFTK DLSLHADKVK TIQALQQIAA IFDTALVAEG IETEDDLRVL RDLGISYGQG 
YLLGRPAALP REQIEEPAMA VMQDRRVAVF PELRRASNAG SLKRLLVLEA PAVGLDATND 
ELASLFMTHT KLHAAAVVDG TRPVGIINRS RFMNEYSRLY YREVWGRKPC LVHANLEPRL 
IERDHNVDEL IGILTSDDQR YLADGFVVTD NGRYAGLGTG DQLVRSVTET RIEAARHANP 
LTFLPGNIPI SQHIERLLNS GVDFVACYAD LNNFKPFNDQ YGYWRGDEMI RLVARLAQAH 
CDPRRDFVGH VGGDDFIILY QSDDWRVQCE QFIAEFAKRA VELFDPSARA AGGIEAEDRF 
GVPRFFPLTT ISIGAVKVAR DEYANAEQVA SEAARAKHDA KTHNVGLLVR DTLDFSTR