| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2016 |
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| Symbol | |
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| ID | 3961764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2172542 |
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| End bp | 2175166 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637916836 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_523272 |
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| Protein GI | 89900801 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAATG CAGCCCGCCA GCACCGCACG CGCCAATGGA TTTTGGCGAC GAGCGTCTTT
GTTTTCAGCG CGGTGGCCAT CGCTGTTTTA ATCTGGCGCT GGGAACAGCA GACACTTATA
GAAGTCCGCG CGCGAGCAGC TGATCTGACC GCAGATCACG CACACACCCT GCAACGCGAT
ATCGAGCGGG CCTTGTCTGC AACCTATGCA ATTGCCGCGC TGGTTCGCCA GGGCCAGGGA
AACATCGCTG ATTTCGAAGC GGTCGCCACT GAAATGCTGC CGTTTTATCC GGGCGTTGCC
GCATTGGGAA TGGCTCCCGA CGGCATTATT CGAAACGTGG TGCCTCTTGC TGGCAATGAA
AAAAGTATTG GCTTTAACCA GTTGAAGGAC AACACCCAGA ACCAAGAGGC GCTCATGGCC
CGTGACACCG GCAGGCTGAC ACTGGCGGGA CCCCTCAAGC TTGCGCAAGG TGGCCTGGGA
GTTGTGGGGC GTCTGCCCGT CTTTCTGAAC GATGCGCAGG GACACAAGGT GTTTTGGGGC
TTCACTTACG TAACCTTGCG GTTTCCGGAT GCTCTGGCCT CTGCCCGCCT GCCTCTTTTG
ACGCAACGCG GTTATGCCTA CGAGCTTTGG CGCACCGCAC CGGACACCGG CGAGCGACAA
AGCATTGAGG CGTCTGGAAA CGGTGTGCTC GATGCACCGG TAGAGCGCAC GCTGGAACTG
CCCAACGGCC AGTGGACACT GAGTGTCGCG CCGATCAACG GCTGGGGCCA ATCAGACCGT
CTCGGGTTCG AGGCCACCAT CAACTTTTTT CTCAGCCTGT TGATGGCCTA TCTCGCCTGG
TTACTGTATG AGATGAGGGT GCGTGACCAG GGATTGGAAG TGCAGGTGAA CGAGCGCACG
GCTGAAATTC TGGCGACGCA GCGACAGCTT CAAGCCACGC TGGGCGCGAT TCCGGACCCG
CTGCTTGAGT TGGGACTGGA CGGGCGCTGT TACAACGCAC ACTCGTCCCG GACTGACTCA
CTGCCATGGC CGACCGAGGA CCTGATCGGC AGAACGATCA TGGAATTGCT GCCGCCGCAG
GCCTGCCAGA TCGTGCTGGC GGCCTTGCAG GAAGCCAAAG AAAAAGAATG TTCAATCGGC
AAACAAATCA AAGTGCCGCT TGACAATGGC ATGCACTGGT TTGAAATGTC GGTGACGCGA
AAATCAGCGT TGCCTGGCGA AGAACCCCTC TTTTTGGTTT TATGCCGCGA CATCACCGAA
AGCAAGCAGG CAGAGAGAAA AATCCAGTTG CTGGCACATT TTGATTCACT CACAGGCCTG
CCCAATCGGG TGTTGTTGAC CGACCGCTGC AACCTGGCAC TTAGCGCCGC GCAGCGCAAT
GGCACACCGC TGGCGCTGTT GCTCCTGGAC CTGGATCATT TCAAGAACGT CAACGACTCG
CTCGGACACC GGGTAGGCGA CGAAGTGCTG ATTGCGCTAG CGGGTCGGCT CAAAGGCGCC
GTGCGTGAGC AGGACACAGT TTGCCGTCTG GGTGGTGATG AGTTCATTTT GGTACTTCCC
GAAACAAATG CTGCGGGTGC TGCACATATC GCCGAAATGT TGCTGCAATC GGCATTGGTG
GCATTTGAGC TCGAACCGCA TGAGTTGACG GTGACACCCA GCATCGGGAT TGCCTTGTTT
CCTGGCGATG GCTCGGACTT CGACACGCTG TCACGTTGCG CCGATGCCGC GATGTACCGC
GCTAAAAAAG ACGGGCGCAA CAACTACCGC TTCTTCACGG CAGAAATGCA GGCTCGCTCT
GAACGCACCC TGACGCTGGA AAATGCGCTG CGCCGTGCTT TGGAGCGCAA TCAGCTGCAG
TTGCACTACC AGCCGCAAAT TTCGCTGGCG AGTGGCCGTG TCGTTGGCGC AGAAGCCTTG
CTGCGATGGA GTCACCCCGA ACTGGGGGCT GTGCCGCCGG CTGAATTCAT TCCCGTGGCC
GAGACCTGCG GACTGATTTT GCCCATCGGC GAATGGGTCC TGCGTACCTC CGTGCAGCAG
CTCAAGGCAT GGATTGACGC CGGGATGCTG CCCATTGCTC TCTCTGTCAA TCTGTCATCG
GTGCAGTTCC GCCATGCCGA CCTACCTGAA CTGGTAACCA GCATTCTGAA TGAAGCCCAG
TTGCCCGCCC ATTTGCTGGA ACTCGAACTG ACCGAAAACG TTGCCATGAC CGACCCGCTG
GGGGCCATTG CCGTCATGAA CAATTTGCAC GAGCGCGGCG TACGCATGTC GATTGATGAC
TTTGGCACGG GTTACTCGTC GCTGAGCTAC CTGAAAAAGT TTCGGGTCTA CAAAATCAAG
ATCGATCAGT CTTTTGTGCG TGACATCACC GAAGACTCCG ACGACAAGGC GATTGTGGGC
GCCATCATCA GCATGGCGAC AAGCCTGGGC ATGCAAACCA TTGCCGAAGG GGTAGAAACC
GAGGGGCAGC TTGAATTTTT GAAGGCCAAG GGCTGCACCG AAGTGCAAGG CTACTATTTC
AGCCGACCGC TGCCGGTTGA ACAGTTTGAG GCGTTCATGG GGACAAAATC ATCTTCAAAC
CAGCCGTTTG TTCCCGCTCA GTCCGCAATT GACATAAGGC TCTGA
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| Protein sequence | MMNAARQHRT RQWILATSVF VFSAVAIAVL IWRWEQQTLI EVRARAADLT ADHAHTLQRD
IERALSATYA IAALVRQGQG NIADFEAVAT EMLPFYPGVA ALGMAPDGII RNVVPLAGNE
KSIGFNQLKD NTQNQEALMA RDTGRLTLAG PLKLAQGGLG VVGRLPVFLN DAQGHKVFWG
FTYVTLRFPD ALASARLPLL TQRGYAYELW RTAPDTGERQ SIEASGNGVL DAPVERTLEL
PNGQWTLSVA PINGWGQSDR LGFEATINFF LSLLMAYLAW LLYEMRVRDQ GLEVQVNERT
AEILATQRQL QATLGAIPDP LLELGLDGRC YNAHSSRTDS LPWPTEDLIG RTIMELLPPQ
ACQIVLAALQ EAKEKECSIG KQIKVPLDNG MHWFEMSVTR KSALPGEEPL FLVLCRDITE
SKQAERKIQL LAHFDSLTGL PNRVLLTDRC NLALSAAQRN GTPLALLLLD LDHFKNVNDS
LGHRVGDEVL IALAGRLKGA VREQDTVCRL GGDEFILVLP ETNAAGAAHI AEMLLQSALV
AFELEPHELT VTPSIGIALF PGDGSDFDTL SRCADAAMYR AKKDGRNNYR FFTAEMQARS
ERTLTLENAL RRALERNQLQ LHYQPQISLA SGRVVGAEAL LRWSHPELGA VPPAEFIPVA
ETCGLILPIG EWVLRTSVQQ LKAWIDAGML PIALSVNLSS VQFRHADLPE LVTSILNEAQ
LPAHLLELEL TENVAMTDPL GAIAVMNNLH ERGVRMSIDD FGTGYSSLSY LKKFRVYKIK
IDQSFVRDIT EDSDDKAIVG AIISMATSLG MQTIAEGVET EGQLEFLKAK GCTEVQGYYF
SRPLPVEQFE AFMGTKSSSN QPFVPAQSAI DIRL
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