| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1970 |
|---|
| Symbol | |
|---|
| ID | 3963086 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2116953 |
|---|
| End bp | 2117516 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637916789 |
|---|
| Product | GrpE protein |
|---|
| Protein accession | YP_523226 |
|---|
| Protein GI | 89900755 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0576] Molecular chaperone GrpE (heat shock protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000003831 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAA CCAATCCAAA CCAAACCAAA CCACCTGCTA CCGGGTATCA GAGCACCGAA
GAAATGGTCG CCGCGCAGGG CGCCTACGAG TCGGACGCTT TGTCGCGTGC ACAAGCCGAT
CTGGCTGAAT TACAAGCCAA AAGCGCTGAA CTCGCCGACC AGTATCTGCG GGCCAAGGCC
GAGGCTGACA ACGCCCGGCG CCGTGCCGAA GACGAAATCT CCAAGGCGCG CAAGTTTGCG
GTCGAGGCTT TTGCCGAAAG TCTGCTGCCC GTAGCAGACA GCTTGGAGGC GGGTCTGATC
ATCAAGGACG CCACCATTGA CCATCTTCGC GAAGGTACCC AGGCGACCCT GCGCCAATTG
CTGGCAGCAC TGGAGCGCAA CAAGGTGATT CCCATCAACC CACAGCCTGG AACGACTAAA
TTTGATCCCC ATCAGCACCA GGCCATCAGC GTGGTGCCCT CGGAGTTCGA TGCCAACATC
GTGGTCACGG TGCTGCAAAA AGGTTACGCC ATCGCCGATC GCGTGCTGCG CCCAGCGCTG
GTCACCGTCG CCGCACCAAA ATAA
|
|---|
| Protein sequence | MSETNPNQTK PPATGYQSTE EMVAAQGAYE SDALSRAQAD LAELQAKSAE LADQYLRAKA
EADNARRRAE DEISKARKFA VEAFAESLLP VADSLEAGLI IKDATIDHLR EGTQATLRQL
LAALERNKVI PINPQPGTTK FDPHQHQAIS VVPSEFDANI VVTVLQKGYA IADRVLRPAL
VTVAAPK
|
|---|
| |