| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1793 |
|---|
| Symbol | |
|---|
| ID | 3963313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 1931031 |
|---|
| End bp | 1932101 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637916616 |
|---|
| Product | 3-isopropylmalate dehydrogenase |
|---|
| Protein accession | YP_523053 |
|---|
| Protein GI | 89900582 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.121615 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTG CAGTGTTGCC AGGCGATGGC ATTGGTACCG AGATCGTGGC GGAAGCCGTC
AAGGTTTTAA ACGCGCTCGA CCTCAAACTT GAAATGGAAA CCGCGCTAGT TGGCGGCGCC
GCCTATGAAG CGTTTGGCCA CCCCCTGCCG GACGCCACCC TCAAGCTGGC CAAAGAAGCC
GATGCCGTTC TTTTTGGTGC GGTCGGCGAC TGGAAATACG ACAAGCTCGA CCGGCCGCTG
CGGCCCGAGC AAGCGATTCT GGGCTTGCGC AAGAATCTGG GCCTGTTTGC CAACTTCCGC
CCGGCCATCT GCTACGAGCA ACTGGTGGAT GCATCGAGCC TCAAGCCCGA GCTGATTGCC
GGCCTCGACA TCCTGATCAT TCGCGAGCTG ACCGGCGACA TCTATTTCGG CCAGCCGCGC
GGGCGCCGCA CCGCCACGGA CGGCCATTTC CCCGGTGCCG AGGAAGCGTT TGACACCATG
CGCTATTCAC GCCCCGAGAT CGAGCGCATT GCCCACGTCG CGTTTCAGGC GGCCCGCAAA
CGCAGCAAAC GCGTGACCAG CGTGGACAAG GCCAACGTGC TGGAAACCTT CCAGTTCTGG
CGCGACGTGC TCACTGAAGT CGGCCAGCAA TACCCGGACG TGGAACTCGA CCACATGTAC
GTGGACAACG CCGCCATGCA ACTGGTGCGC GCGCCCAAGA AATTTGACGT GGTCGTCACC
GGCAACCTGT TTGGCGACAT TTTGAGCGAC GAAGCCGCCA TGCTCACCGG CTCCATCGGC
ATGCTGCCTT CGGCGTCCCT GAATGCCAGC AGTCAAGGCC TGTACGAACC CAGCCACGGC
AGCGCACCAG ACATCGCCGG CAAAGGCGTC GCCAACCCGT TGGCGACCAT TCTGAGCGCC
GCCATGATGC TGCGCTTCAG TCTGAACCAG GAAGTGGCTG CCCAGCGCAT CGAGGCCGCC
GTCAAAGATG TGCTGGTGCA AGGTCTGCGC ACCGCAGATA TCTTCAGCAC GGGCACGACA
CGAGTCAGCA CGGTTGAAAT GGGCGCGGCG GTGGTAAAGG CCTTGAAATA G
|
|---|
| Protein sequence | MKIAVLPGDG IGTEIVAEAV KVLNALDLKL EMETALVGGA AYEAFGHPLP DATLKLAKEA
DAVLFGAVGD WKYDKLDRPL RPEQAILGLR KNLGLFANFR PAICYEQLVD ASSLKPELIA
GLDILIIREL TGDIYFGQPR GRRTATDGHF PGAEEAFDTM RYSRPEIERI AHVAFQAARK
RSKRVTSVDK ANVLETFQFW RDVLTEVGQQ YPDVELDHMY VDNAAMQLVR APKKFDVVVT
GNLFGDILSD EAAMLTGSIG MLPSASLNAS SQGLYEPSHG SAPDIAGKGV ANPLATILSA
AMMLRFSLNQ EVAAQRIEAA VKDVLVQGLR TADIFSTGTT RVSTVEMGAA VVKALK
|
|---|
| |