| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1788 |
|---|
| Symbol | |
|---|
| ID | 3963308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 1923935 |
|---|
| End bp | 1925242 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637916611 |
|---|
| Product | tryptophan synthase subunit beta |
|---|
| Protein accession | YP_523048 |
|---|
| Protein GI | 89900577 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0133] Tryptophan synthase beta chain |
|---|
| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGAGT ATCAACAACC CGACCCGCGT GGCCACTTCG GCATTTACGG CGGCAGCTTT
GTCTCCGAAA CGCTGACGCA TGCCATCAAC GAACTCAAGG CGGCTTACGC CAAGTACCAG
TTTGACCCGG CCTTCGTCGC CGAATTCAAC TACGAGCTGG CCCACTTCGT CGGCCGTCCT
TCGCCGGTTT ACCATGCCGA TCGCATGAGC CGGGAACAGG GCGGCGCGCA GATCTTTCTC
AAGCGCGAAG ACCTGAACCA CACCGGCGCC CACAAGATCA ACAACACCAT CGGCCAGGCC
ATGCTGGCCA GACGCATGGG CAAGCCGCGC GTCATTGCCG AAACCGGCGC CGGCCAGCAC
GGCGTGGCCA CGGCCACCAT CTGCGCCCGC TACGGTCTGG AATGCGTGGT CTACATGGGC
AGTGAAGACG TCAAGCGGCA AAGCCCCAAT GTGTACCGCA TGAATCTGCT GGGCGCCACG
GTGGTGCCGG TCGAGAGCGG CAGCCGAACC CTCAAAGATG CCTTGAACGA GGCCATGCGC
GACTGGGTGG CCAACGTGGA CAACACTTTT TACATCATCG GCACGGTCGC CGGACCACAC
CCCTACCCGA TGATGGTGCG CGATTTTCAG AGCGTCATCG GCAAGGAATG CCTGGTGCAA
ATGCCCGAAA TGCTGCAAGC CGCAGGGTGC CATACAACGC AACCCGATGC GGTGGTGGCT
TGCGTCGGCG GCGGCTCCAA CGCGATGGGT ATTTTTCACC CCTATATTGC GCATGAAGCC
ACACGCCTGA TCGGCGTCGA GGCAGCCGGC CTTGGCATGG ACAGCGGCAA ACACTCGGCG
TCCCTGCAAC GTGGCAGTCC GGGCGTGCTG CACGGCAACC GCACCTACGT GCTGCAAGAC
GACAACGGGC AAGTGACCGA AACCCACAGC ATCAGCGCCG GGCTGGACTA CCCTGGCGTC
GGCCCGGAAC ATGCCTTCCT CAAGGACATC GGCCGCGCCG AATACGTCGG CATCACCGAC
CAGGAGGCGT TGGCTGCCTT CCATTACCTG TGCCGCACCG AAGGCATCAT TCCGGCGCTC
GAATCGAGCC ACGCCGTGGC GTATGCCATG AAGCTTGCGA AAACCATGCG CCCCGACCAG
TCGATCCTGG TCAATCTGTC GGGCCGCGGC GACAAGGACA TCGGCACCGT GGCCGACCTC
AGCCACGCCG ACTTTTATTG CCGCCCGAGT TGCAAAGGCC AATCGGTCAA AGGCGCAGAC
AACGCGCAGC CCAGCGCCAA CCAACAAGTT GTGAAGGTCG CCCAATGA
|
|---|
| Protein sequence | MFEYQQPDPR GHFGIYGGSF VSETLTHAIN ELKAAYAKYQ FDPAFVAEFN YELAHFVGRP
SPVYHADRMS REQGGAQIFL KREDLNHTGA HKINNTIGQA MLARRMGKPR VIAETGAGQH
GVATATICAR YGLECVVYMG SEDVKRQSPN VYRMNLLGAT VVPVESGSRT LKDALNEAMR
DWVANVDNTF YIIGTVAGPH PYPMMVRDFQ SVIGKECLVQ MPEMLQAAGC HTTQPDAVVA
CVGGGSNAMG IFHPYIAHEA TRLIGVEAAG LGMDSGKHSA SLQRGSPGVL HGNRTYVLQD
DNGQVTETHS ISAGLDYPGV GPEHAFLKDI GRAEYVGITD QEALAAFHYL CRTEGIIPAL
ESSHAVAYAM KLAKTMRPDQ SILVNLSGRG DKDIGTVADL SHADFYCRPS CKGQSVKGAD
NAQPSANQQV VKVAQ
|
|---|
| |