| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1779 |
|---|
| Symbol | |
|---|
| ID | 3963299 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 1914325 |
|---|
| End bp | 1915287 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637916602 |
|---|
| Product | ABC transporter, substrate-binding protein, aliphatic sulphonates |
|---|
| Protein accession | YP_523039 |
|---|
| Protein GI | 89900568 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAACG CTCTCCCTAT TTCGCGTCGT CAGGTTCTGG CGGCTGGTCT GGCCACGGCC
GCCCTCAGCG GCAGTTCACT GGCGCTGGCA CAAAAGGCCG CGCGCACGCT GCGCATCGGC
CATCAAAAAG GCTGGTTGTC CATCCTCAAA GCCCGGGGCA CGCTGGAAAA GCGCCTGGCG
CCGTTGGGTG TGGGCATCAG CTGGACCGAA TTCAACGCCG GCCCGGTGCA ACTCGAAGCA
CTCAACGTCG GCGCCATTGA CTTTGGTGAC GTGGGCGAAG CGCCTCCCAT CTTTGCCCAG
GCTGCCGGTG CGCCGCTGGT GTATGCCGGT GCCACCGTGC CGCGTCCTCA GCTGGAAGCC
ATCATCGTGC CCAAGGGCTC AAGCATCAAA ACCGTGGCCG ACCTCAAGGG CAAGAAGATC
GCCTTCAACA AAGGCTCCAA TGTGCAGTAC TTTCTGGTCA AGTTGCTGGA GAAACATGGC
CTGAAATACG GCGACGTGCA GTCCATCTTC CTGCCCCCAC CCGATGCCCG CGCCGCCTTT
CAAAAAGGGG CCGTCGATGC CTGGATCATC TGGGATCCGT TCCTGGCCTC GGCACAAAAA
ACGCTGGATG CGCAGATCCT GGCCGATGCC AAGGGCATTG TGAACAACCG CGGCTACTAC
TTCACCTCGC GCGACTTCGC CACCAAAAAC ACCGACGTGC TGAAGATTGC GATTGAAGAA
ATCAACGCCA TTGACAGCTG GATTGCCAAC AACAAACCCG CTGCCGCCAC AGAACTGGCG
GGCGTGCTGG GTCTGGACAA GAGCGTCACC GAGCTCTACC TGAGCCGCGC CGCCTACGGC
ACCGCGCCCG TCACACGCGA CATTCTGGGT GAGCAGCAAG TGATTGCCGA CACCTTTTTC
GACCTCAAAC TCATCCCGAA AAAACTCAAC CTGCTGCACG CCGCACCGGT TGATCTGGGT
TGA
|
|---|
| Protein sequence | MPNALPISRR QVLAAGLATA ALSGSSLALA QKAARTLRIG HQKGWLSILK ARGTLEKRLA
PLGVGISWTE FNAGPVQLEA LNVGAIDFGD VGEAPPIFAQ AAGAPLVYAG ATVPRPQLEA
IIVPKGSSIK TVADLKGKKI AFNKGSNVQY FLVKLLEKHG LKYGDVQSIF LPPPDARAAF
QKGAVDAWII WDPFLASAQK TLDAQILADA KGIVNNRGYY FTSRDFATKN TDVLKIAIEE
INAIDSWIAN NKPAAATELA GVLGLDKSVT ELYLSRAAYG TAPVTRDILG EQQVIADTFF
DLKLIPKKLN LLHAAPVDLG
|
|---|
| |