Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_1720 |
Symbol | |
ID | 3964019 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 1856782 |
End bp | 1859805 |
Gene Length | 3024 bp |
Protein Length | 1007 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637916543 |
Product | ribonuclease |
Protein accession | YP_522980 |
Protein GI | 89900509 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACGGA TGCTGATTAA CGCCACGCAG GCTGAAGAAC GCCGCCTGGC CATTGTCGAC GGACAAAAAC TCCTCGACTA CGAGATTGAA ATCGAAGGTT GCGAACAACG CAAGGGCAAC ATCTACAAGG CCGTCGTCAC CCGCGTCGAG CCGTCGCTGG AAGCCTGTTT TGTCGATTAC GGTGAAGACC GTCATGGCTT TCTGCCATTC AAGGAAATTT CCCGGCAGTA TTTTCAACCC GGCGTGGCCG TCGGCCAGGC ACGCATCCAG GATGCCATCC GTGAAGGCCA GGAACTGCTG GTGCAAGTGG AAAAGGAAGA GCGCGGCAAC AAAGGCGCTG CCCTGACCAC CTTCGTGTCG CTCGCTGGCC GCTACGTGGT GCTGATGCCC AATAACCCAC GCGGAGGCGG TGTCTCACGC CGCATTGAAG GCGAAGACCG GGCCGACCTG AAAGAGGCCC TCGATCAGCT TGAATACCCC AACGGGATGA GCATCATTGC CCGCACCGCC GGCATTGGCC GCAGTGCGCC CGAGTTGCAA TGGGACCTGA ACTACCTGCT TAAATTGTGG GCCGCCATTG ATGGCGCCGC CAAGGGTGCC AAGGGCGCCT TCCTGATTTA CCAGGAATCG TCTTTGGTGA TCCGCGCCAT TCGTGATTAC TTCAACAACG ACATCGGCGA CATCCTGATC GACACCGACG ACGTGTTTGA CCAGGCCCAG CAATTCATGG CCCACGTGAT GCCCGAGCAC GCCGACCGCG TCAAGCGCTA CCGCGATGAT GCACCGCTGT TCAGCCGTTT CCAGATCGAG CACCAGATCG AATCGGCCTA CGCCCGCACC GTGCAATTGC CCAGCGGCGG CGCCATTGTG ATTGACCACA CCGAAGCGCT GGTGTCGGTG GACGTCAACT CGGCACGCGC CATCAAAGGC AGCGACATCG AAGAAACTGC CACCCGCACC AATTTGGAAG CGGCTGAAGA AGTGGCACGC CAGATGCGCC TGCGGGACTT GGGTGGCCTG ATCGTGATCG ACTTTATCGA CATGGAAGAA AGCCGCAACC GCCGCGACGT GGAAAACCGC CTGCGTGACT CGCTGCGGCA AGACCGCGCC CGTGTGCAGT TTGCCACCAT CAGCAAATTT GGTCTGATGG AGATGAGCCG CCAGCGGCTG CGCCCCGCCT TGTCAGAGGG CGCCTCCATT CCCTGCCCGC GTTGCGGCGG CTCCGGCCAC ATCCGTGACA CGGAATCCAG TGCATTGCAG ATCTTGCGCA TCATCCAGGA AGAGTCTCTG AAAGACAACA CGGCTTCGGT GCTGTGCCAG GTCCCGGTTG AGGTTGCCTC CTTCTTGCTT AATGAAAAAC GGGCCGAGAT TGCAAAAATT GAACTCAAGC AACGCATCAA CGTCCTGATG GTGCCCAACA AGACACTGGA AACCCCCAAC TACAAGCTGG AGCGTCTCAA GCATGACGAC CCGCGCCTGG ACAACATCGA ATCCAGCTAC AAGTTGGCCG ATCAGATGGA AGACGCCACG GCGGTGACAC GCCGCTCGCA GGAACCCACC AACAAGCAGA CGCCGATCAT CAAAGGCGTT TTGCCCGATG CCCCGGCGCC TGTTGCACCG CCCCGGCCCG AGCCCGTCAA GCCAGCGGTC GCCGCGCGCA CGGCACCCAG GCCCGTACCT GCATCCGTGG CCCCAGTGCC ACCGGTAGAA GGTGGTTTCT TTGGCTGGCT CAAGCGGCTG TTTGCGCCCG AAGCAACGCC TGTTGTCCCC GCGCAACCCA AGGCAGACTC GGCCCAGGCC GACAAGCGCG AAGAACGCCC GAGCCGCGAA GGCGCCCGTC GTGGCGAACC CCGAAGCGAC GGTCGCGACG AAGGTCGTGG CGGCAGAGGT GGCCGCGGCG GACGTGGTGA CGGACGTGGT GACGGACGTG GTGACGGACG TGGTGACGGA CGTGGTGACG GACGTGGCGG CAGAACCGGT CGCGGTGAGC GTCCAGCGTC TGGCCCGCGT GAGCGTTTCG ACGGCGAAGG CAGACCCGCC GCGATGGATA CGGGCGCCAG CCAAGTGCAG ACGTCACTCA ACGGGACAGG CCAGGAAGCA TCCCGGACGG AACCAGGGCA AGAGCGCCCA GCGCGCAATT CGGAACGGGG TGGCCGTGGC GGCCGCGGTG GTCGCGGCCG CAGCGAGCGA GTCGACGGCG TCGAGTCAAC CAGTCCCGCT GAACGCGAAG AGCTCCGGCC CGACCTGCGC AACGAGCGTC GTCCCGAACG CAACCGTCGG CCTGACGCCA ACGTTGCTAA CGTCCCCAGC GACGCGTTCA ACCAAGAGTC CAACCGCACC GATGTCTTAT TAGCCGTCTC GCGCGAGAAT GTTGCCGACC TCGAACCAGG CCTTGCCGCT CAGGCGACGG AGCGTCCCGA GGGCACGCCA ACGCGTGAAA AGCGCAGCCG TGACCGCTAT GGCCGGGATC GTGCACCTCG CGGTGAGCGC CCCGAACAAG GGGAGCGTCA GGACCAGCCA TCGCGCGACA GCCAGCCTTC AGCAGAACCG TCGGCGCAAG AGCCCCGCAA GTCCTACTTT ACGGCCAGCC CTGAAGCAGC CGCGACCCCG GCGGAACCGA CCCCGGTTGC GGCAACGCCA GCCGCAGCGC CGGCAGCAAT CCCTGTCGCT GTGTCATCTG CCGCGCCGGA GCCCGTGGCA ACACCGGTCA CCGTGTCCAT GGTCGCGGCC CCAGCGGCTG AGCCTGTGGC AGCGGCAGCA GCCATGCCCA GGCTTGAGCA GTTTGAGTTG CCACTGGGCG AGTTGGTCCA GGTGGCCCAG AGCTCCGGCC TGAGCTGGGT CAACTCAGAC CCTGAAAAGA TTGCAGCGGT CCAGGCGGCC ATCGCGGCCG AACCAAAACC AGTTCACGTG CCCCGTGAAC GCCCTGCAGT GGTAAAAGTT GAGGGTGGAC CACTGGTTTT AGTGGAAACC AAACGCGATT TGCGTAACAT GACGCTGCCC TTTGAAGAAA AGGAACCTCA GTAA
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Protein sequence | MKRMLINATQ AEERRLAIVD GQKLLDYEIE IEGCEQRKGN IYKAVVTRVE PSLEACFVDY GEDRHGFLPF KEISRQYFQP GVAVGQARIQ DAIREGQELL VQVEKEERGN KGAALTTFVS LAGRYVVLMP NNPRGGGVSR RIEGEDRADL KEALDQLEYP NGMSIIARTA GIGRSAPELQ WDLNYLLKLW AAIDGAAKGA KGAFLIYQES SLVIRAIRDY FNNDIGDILI DTDDVFDQAQ QFMAHVMPEH ADRVKRYRDD APLFSRFQIE HQIESAYART VQLPSGGAIV IDHTEALVSV DVNSARAIKG SDIEETATRT NLEAAEEVAR QMRLRDLGGL IVIDFIDMEE SRNRRDVENR LRDSLRQDRA RVQFATISKF GLMEMSRQRL RPALSEGASI PCPRCGGSGH IRDTESSALQ ILRIIQEESL KDNTASVLCQ VPVEVASFLL NEKRAEIAKI ELKQRINVLM VPNKTLETPN YKLERLKHDD PRLDNIESSY KLADQMEDAT AVTRRSQEPT NKQTPIIKGV LPDAPAPVAP PRPEPVKPAV AARTAPRPVP ASVAPVPPVE GGFFGWLKRL FAPEATPVVP AQPKADSAQA DKREERPSRE GARRGEPRSD GRDEGRGGRG GRGGRGDGRG DGRGDGRGDG RGDGRGGRTG RGERPASGPR ERFDGEGRPA AMDTGASQVQ TSLNGTGQEA SRTEPGQERP ARNSERGGRG GRGGRGRSER VDGVESTSPA EREELRPDLR NERRPERNRR PDANVANVPS DAFNQESNRT DVLLAVSREN VADLEPGLAA QATERPEGTP TREKRSRDRY GRDRAPRGER PEQGERQDQP SRDSQPSAEP SAQEPRKSYF TASPEAAATP AEPTPVAATP AAAPAAIPVA VSSAAPEPVA TPVTVSMVAA PAAEPVAAAA AMPRLEQFEL PLGELVQVAQ SSGLSWVNSD PEKIAAVQAA IAAEPKPVHV PRERPAVVKV EGGPLVLVET KRDLRNMTLP FEEKEPQ
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