| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1713 |
|---|
| Symbol | |
|---|
| ID | 3962511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1845251 |
|---|
| End bp | 1848088 |
|---|
| Gene Length | 2838 bp |
|---|
| Protein Length | 945 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637916536 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_522973 |
|---|
| Protein GI | 89900502 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.436521 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTTG GATTTGTTCG AATCGTCGCA GCGACCCTGA TGATCTACAC GCTTGCCGGA
TGCGGGGGTT CCGACGGTGC CACTGGCCCG ACGGGCCCCA CCGGCCCTGC GGGCCCACCC
GGCGCGCCAG GCGCGAACGC GGGTTCGGTC GTGAAACTCT CCAGTCTGAC CCCTGAACAA
TACGCTGCAA CCTCATTTGA GGCAACAATC ACCGGCGTGA CCATCGCCAG TGCACCGGTG
GTGAGTTTCA AAGTTGCCGA CGCGAACGGC ACACCCATCG TGGGCCTGGG CCTGGCCACC
AAAGCGTCAA ATGCGACGGT CGCGCGATAC CAGAATTTGG CCTTCTCTCT GGCAAAACTG
GTGCCGGGGC CGGCCGGTGT GGTAACGGGC ACGAGCGGTG GCCCCAGCAA GTGGGTCAGC
TACATTGTGA CGACGGTGCC GACCACGACG ACCGCGGCGA CCGCCAGTCG CCCCTCGACC
GACAGCCAGG GCACCCTGGT GGACAACGGA GACGGCACTT ACCAATACAC TTTTTATCGT
GATATCACTC AAGTCAAGGC GCAAGTCGCC GGTTTCACGC TCACCGGCAT CAATGCCGCG
GCGGATCTGG GCGATCTGAC CTACGACCCG AACGCAGTTC ACCGGCTGGC GCTGTCGATT
TCCGGCAATG TCCCGGGAAC CGGCAACAAT ACCGCCGACG AAGTGCAGGT GGTTCCGGCG
GTACCGCTGG CCAAGCCGAA CAATGCCATC TTTGACTTCA TTCCAGCGAC CGGCACAGCA
CTGGCCGTCA CGGATCCGGG ACAGCGTCTG ATCGTCGACA AGATCAGCTG CAACGAATGC
CACGGCAAAC TCGGCGGCAT CCCCGGGACC GAAAGTGCAG CCTTCCATGG CGGTAGCCGT
TACGACCCAC GCTTCTGCGT CACCTGCCAC ACCGACCAGC GCAAGTACGG GCAGCCAAGA
GCGGTGTCCA CCAATTTTGC GTTCCCGGCA CTTACCAAGA CGGTGAGCGC GACGGGTAGC
GTCAGTTACT CACCTTCCAC CTATGTTGCC GACGGCGTGA CGGTTGGGGA CTTCCCGGTT
CTGATTCACA GAATCCACAA GGGTGACCTG CTGGTCAAGC AAAACTATAA CTTTGCCAAC
GTCTTGCTGA ATGAAACCAA ATTCCCGCAA GACATCCGCA ATTGCAGCAA GTGTCACGAC
AATACCGCGC CCAAGGTTGC GCCGCAGGCC GACAATTTCA AGAATGTCCC CAGCCGTCTC
GCCTGCGGTG CCTGCCACGA CGGCATCGAC TTTGCGACTG GCCAGGGTGT GACCAACGCT
GCCTTTAACA GCGCAAAACT GCTGGGCACA ACCCCGGCGG CCACCGGCCA CGTCGGTGGG
GCCCAGGCCG ACGACACCAA GTGCGGCTTG TGCCATGATG CGACCTCGAT TCAGCAGGTG
TATCACGTTG CGATAACTCC CCCGAATCCG GCGAACGCCC TCGTCGCGGG CGGAACCAAC
AACAACACCA ACGCGGCGTG GATTGCCTCA AACGTGGACA ACCTGCCCAC CGGCGCGATC
AAGGTGACCT ATGACGTCCT CAGCGTTTCG CGCAATGCCA GCAAGCGGCC GGTGATCGTC
TTCAAGATGC TGCAGAACGG CGTCGCGGTG CCTTTCAACA CTTTTAGCGC TACCGGCAAA
ACGGAGATGT GGGACAACTT CATGGGTTCG CCCAGCGCGC AATTTGTCTT TGCCGTGCCC
CAGGACGGCA TAGCCGCGCC GGCTGACTTC AACGCCTCGG CCTCTGGCTA TCTCAGAAGC
ATCTGGAATG GCAGCGCCAC CGGCAGTTCC GCCGGCACGA TGACCGGCCC GGACGCCAAC
GGCTATTACA CCGTCACCCT GACCGGCGTC ACCATTCCCG ACAACGCCGT GATGCTGACG
GGCGGCATCG GCTACAGCTA CGGCCTGCGG ACCAGCATGC CGCTGACGCA GACCAATCTG
ATCGACAACT CGCTGGCCGA CCCGAATCGA AAGGGTAGAT TTGCCCTTGC CGCCGCAACT
GCCACCTCGG GCCTGACGGC TGGCATGCCG AACATGATCG GTGGCCTCAT TGTCATCGCG
CCGGATACGC AGAAGGCGGC CACGGCGACA ACGGGTCGGC GTGCCATTGT CGAAGACAAA
CGCTGCAATG CCTGCCACCG GGAACTCGGG GCGTTCACGA CGGAGTCCTT CCACGCCGGC
CAACGCAACG ACGGCACGAC TTGCGCGTGG TGCCACAATC CCAACAAAAC CAGCAGCGGC
TGGTCTGCGG ATTCGACCTC CTTCATCCAT GCGATACATG CGAGCGACAA GCGCTCGGTG
CCCTTCACCT GGCACGCCTC GTCGACCACG GAGTCCTTTG CCGACATCGG CTATCCCGGC
ATCCTGAACA AGTGCGAGAC CTGCCACCTG CCCGGCACCT ATGACTTCAG CGCCAGCGCG
TCGGCCGCGG CAGCGCCCAA TCGCCTGTAC CGGTACGTTG GTACGGGCAA ATTCGACGGC
ACGGTCGCCG GGTCGCTCGC CGCGTTCTCT ATCTCGCCCT ATGTGACAGC GGACAATGTG
AAAGACTACG GCGCAGGTTT CAGCTTCAAT GCCAGTACCG GGGTGACGGT TCCGGCGGCG
GACACCACGC TGGTGAATTC GCCGACCGCC GCCGTCTGCT TTGCTTGCCA TGACAATGAG
GTAGCGGTGG CGCATATGCG AACCAACGGT GGTTCAATCT ACGCGGCGCG CGCCGTTGCG
CTTGCTACCA CTGAGTCGTG CCTGATTTGC CATGGTTCAG GCAAGGTGGC GGATATCAGG
GTGGTGCACA CGAAGTAG
|
|---|
| Protein sequence | MNFGFVRIVA ATLMIYTLAG CGGSDGATGP TGPTGPAGPP GAPGANAGSV VKLSSLTPEQ
YAATSFEATI TGVTIASAPV VSFKVADANG TPIVGLGLAT KASNATVARY QNLAFSLAKL
VPGPAGVVTG TSGGPSKWVS YIVTTVPTTT TAATASRPST DSQGTLVDNG DGTYQYTFYR
DITQVKAQVA GFTLTGINAA ADLGDLTYDP NAVHRLALSI SGNVPGTGNN TADEVQVVPA
VPLAKPNNAI FDFIPATGTA LAVTDPGQRL IVDKISCNEC HGKLGGIPGT ESAAFHGGSR
YDPRFCVTCH TDQRKYGQPR AVSTNFAFPA LTKTVSATGS VSYSPSTYVA DGVTVGDFPV
LIHRIHKGDL LVKQNYNFAN VLLNETKFPQ DIRNCSKCHD NTAPKVAPQA DNFKNVPSRL
ACGACHDGID FATGQGVTNA AFNSAKLLGT TPAATGHVGG AQADDTKCGL CHDATSIQQV
YHVAITPPNP ANALVAGGTN NNTNAAWIAS NVDNLPTGAI KVTYDVLSVS RNASKRPVIV
FKMLQNGVAV PFNTFSATGK TEMWDNFMGS PSAQFVFAVP QDGIAAPADF NASASGYLRS
IWNGSATGSS AGTMTGPDAN GYYTVTLTGV TIPDNAVMLT GGIGYSYGLR TSMPLTQTNL
IDNSLADPNR KGRFALAAAT ATSGLTAGMP NMIGGLIVIA PDTQKAATAT TGRRAIVEDK
RCNACHRELG AFTTESFHAG QRNDGTTCAW CHNPNKTSSG WSADSTSFIH AIHASDKRSV
PFTWHASSTT ESFADIGYPG ILNKCETCHL PGTYDFSASA SAAAAPNRLY RYVGTGKFDG
TVAGSLAAFS ISPYVTADNV KDYGAGFSFN ASTGVTVPAA DTTLVNSPTA AVCFACHDNE
VAVAHMRTNG GSIYAARAVA LATTESCLIC HGSGKVADIR VVHTK
|
|---|
| |