Gene Rfer_1561 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_1561 
Symbol 
ID3963268 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp1687197 
End bp1688219 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content57% 
IMG OID637916384 
ProductADP-L-glycero-D-manno-heptose-6-epimerase 
Protein accessionYP_522824 
Protein GI89900353 
COG category[M] Cell wall/membrane/envelope biogenesis
[G] Carbohydrate transport and metabolism 
COG ID[COG0451] Nucleoside-diphosphate-sugar epimerases 
TIGRFAM ID[TIGR02197] ADP-L-glycero-D-manno-heptose-6-epimerase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCGTA TCGTCGTGAC CGGAGCTGCC GGTTTTATTG GCAGCAACAT CATTCAGGGG 
CTCAACGCCC GCGGTTTGAA TGACATCATC GCCATCGACG ACCTGACGCA AGGCGACAAG
TTTCGCAACC TCGCCCATCT CAAGATTTCA GACTATGTAG ACGCGAGCGT GTTCTACGAT
CTGTTTGCCA ACGGCGCCTA TGGCCAGATC GAGGCCGTGT TTCATGAGGG CGCCTGCAGC
GACACCATGG AAAGCAATGG CAAGTACATG ATGGACAACA ACTATGCGAC CTCTGTGAAC
TTGTTCCAGG CCTGCCAGAA GCGCGGAGCG CGCTTGCTGT ATGCATCGAG CGCCGCTACG
TACGGTGGCT CGGACACGTT CCGGGAAGAC CCAGCCTTTG AGCGTCCTCT GAATGTATAT
GGCTATTCCA AGCTGCTGTT TGATCAGCGT ATGCGACGTG AGTGCGGCAA CGACTTTCGG
CGCTCGGTTG CCGGCAAGAC GGGCCAGGTA GTGGGTTTTC GCTACTTCAA TGTCTATGGG
CCGCACGAGC AACACAAAGG CCGCATGGCC AGCGTCGCCT TTCATCAGTT TCACCAGTTT
CAGGCTGAGG GCAAGGTCAA GCTGTTTGCT GACTACGGCG GCTATGCCGC AGGAGCACAG
ATGCGTGACT TCATCTTTAT TGACGACGTG GTAGCGGTGA ACCTGTGGTT CTTTGACCAC
CCCGGCGTGT CCGGCATTTT CAATCTGGGC ACAGGCCGGG CGCAGCCCTT CAATGACGTG
GCCAGCTCGG TTGTCAATGC ATTGCGTGGC CTCTCAGGCC AAACCGCACT CGGGCTTGAA
GCCCTCACTG AAGCCGGTTT GATTGAGTAC ATCCCCTTCC CGGACGCCCT GCGTGGCAAG
TACCAAAGCT ACACCCAGGC CGATTTGAGC GCCTTGCGTG CCACCGGCTG CGACCACCCA
TTCGCCGATG TGCAGACCGG TGTGTCGAAC TATGTGCAAT GGCTGGCCCA GCAGGATTCT
TGA
 
Protein sequence
MTRIVVTGAA GFIGSNIIQG LNARGLNDII AIDDLTQGDK FRNLAHLKIS DYVDASVFYD 
LFANGAYGQI EAVFHEGACS DTMESNGKYM MDNNYATSVN LFQACQKRGA RLLYASSAAT
YGGSDTFRED PAFERPLNVY GYSKLLFDQR MRRECGNDFR RSVAGKTGQV VGFRYFNVYG
PHEQHKGRMA SVAFHQFHQF QAEGKVKLFA DYGGYAAGAQ MRDFIFIDDV VAVNLWFFDH
PGVSGIFNLG TGRAQPFNDV ASSVVNALRG LSGQTALGLE ALTEAGLIEY IPFPDALRGK
YQSYTQADLS ALRATGCDHP FADVQTGVSN YVQWLAQQDS