Gene Rfer_1555 details

Gene Information

• Locus tag: Rfer_1555
• Symbol: clpX
• ID: 3960545
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 1677523
• End bp: 1678788
• Gene Length: 1266 bp
• Protein Length: 421 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 637916375
• Product: ATP-dependent protease ATP-binding subunit ClpX
• Protein accession: YP_522818
• Protein GI: 89900347
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1219] ATP-dependent protease Clp, ATPase subunit
• TIGRFAM ID: [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX)

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTGAAA AAAAAGGCTC CTCCGGCGAG AAAACGCTTT ATTGTTCTTT TTGCGGCAAA 
AGCCAGCATG AAGTCAAGAA GCTGATCGCG GGCCCGTCGG TATTTGTTTG CGACGAGTGC 
ATTGACCTTT GCAACGAAAT CATTCGCGAT GAGTTGCCGC CCAGCACTGA AGCGCGAGGT 
GACAGCAGTG AGCTGCCAAC GCCGCTGGAG ATCAAGACCA ACCTTGACAA TTACGTGATT 
GGCCAGGAGC CGGCCAAGCG GACGCTGGCG GTGGCGGTTT ACAACCACTA CAAGCGCTTG 
CGGCACCAGG AAAAGGCCAA AAAAGATGAC GTGGAGCTGG CCAAAAGCAA TATTTTGCTG 
ATCGGCCCGA CCGGTTCCGG CAAAACGCTG TTGGCGCAAA CGCTGGCCCG CATGCTCGAC 
GTGCCTTTTG TCATGGCTGA TGCCACCACA CTGACCGAGG CGGGTTATGT GGGTGAGGAC 
GTTGAGAACA TTGTGCTCAA GCTTCTGCAA AGCTGCAATT ACGAAGTGGA GCGCGCCCAG 
CGCGGCATTG TCTATATTGA TGAAATCGAC AAAATTTCCC GCAAGTCGGA CAACCCTTCC 
ATTACCCGTG ATGTCTCGGG GGAAGGCGTG CAGCAAGCGC TGCTTAAGCT GATTGAAGGC 
ACCATGGCCA GCGTGCCACC GCAAGGCGGG CGCAAACATC CGAATCAGGA TTTTGTGCAA 
GTCGATACCA CCAATATCCT GTTCATCTGC GGTGGCGCAT TTTCCGGTCT GGAGAAAGTG 
ATCGACAACC GCACCCAATC GTCCGGCATG GGTTTTGGGG CCACGGTCAA AAGCAAAGAG 
CAGCGCAGTC TGACTGAGGT TTTCAAGGAA GTCGAGCCCG AGGACTTGAT CAAATTTGGT 
CTGATTCCTG AATTGGTGGG CCGGATGCCG GTGCTGGCAA CGCTGGCTGA ACTCAGTGAA 
GATGCCTTGG TACAGATTTT GACTGAGCCC AAAAACGCGC TGGTCAAGCA GTACAGCAAG 
CTGCTGGCGA TGGAGGGCGT TGATCTTGAA ATTCGTCCTT CGGCCTTGAA AGCGATTGCC 
AAAAAAGCAC TGGCCCGCAA GACGGGAGCG CGTGGCTTGC GCTCGATTCT TGAACAATCA 
TTGATTGACA CCATGTTCGA CTTACCCAAT ACGTCTAACG TTGACAAGGT CGTCGTGGAT 
GAATCGACCA TTGATGAGAA TAAGCCGCCT TTGTTGGTGT ACCGCGAGGT TGCCAAGAAG 
GCCTGA 

 

Protein sequence

MAEKKGSSGE KTLYCSFCGK SQHEVKKLIA GPSVFVCDEC IDLCNEIIRD ELPPSTEARG 
DSSELPTPLE IKTNLDNYVI GQEPAKRTLA VAVYNHYKRL RHQEKAKKDD VELAKSNILL 
IGPTGSGKTL LAQTLARMLD VPFVMADATT LTEAGYVGED VENIVLKLLQ SCNYEVERAQ 
RGIVYIDEID KISRKSDNPS ITRDVSGEGV QQALLKLIEG TMASVPPQGG RKHPNQDFVQ 
VDTTNILFIC GGAFSGLEKV IDNRTQSSGM GFGATVKSKE QRSLTEVFKE VEPEDLIKFG 
LIPELVGRMP VLATLAELSE DALVQILTEP KNALVKQYSK LLAMEGVDLE IRPSALKAIA 
KKALARKTGA RGLRSILEQS LIDTMFDLPN TSNVDKVVVD ESTIDENKPP LLVYREVAKK 
A