Gene Rfer_1525 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_1525 
Symbol 
ID3960679 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp1641737 
End bp1642504 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content55% 
IMG OID637916344 
Productextracellular solute-binding protein 
Protein accessionYP_522788 
Protein GI89900317 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID[TIGR01096] lysine-arginine-ornithine-binding periplasmic protein 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.490796 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAC TCCTCCTGGC TATCGCCATT GGATCGCTCT GCGCTGTCTC GTTTGCCCAA 
GGCAAAGACC TCAAGGTCGC CATCGACCCG ACTTACGAGC CCTTCACGTT CAAGACCGCC
GACGGCAAGC CGACCGGCTT CGACGTCGAC ATCGCCAATG CGCTGTGCGA GCAGGTCAAG
CGCAAATGTG TGTTCGTCGA GCAAGTCTGG GACAGCATGA TTCCGGGCCT GCAGGCCAAG
AAATACGATG TCATCATCAG CTCGATGTCG ATCACCGCTG ACCGGCTCAA GGTGATTGAT
TTCACCAACA AGTACTACAA CACACCGAGC CGCATCGTGG TGAAGAAAGA CGTCAAGTTC
GATGGCCCGG CTTCGCTCAA GGGCAAAAAG CTCGGCGTTC TCAAGGGCAG CACGCAAGAA
AAATACGCCA TGGGCGAACT CAAGACCGTG GGTGTGGAAG TGGTCCCCTA CGAAGCGCAG
GACCAGGTTT ACCTGGACAT CAAGTCCGGT CGTCTGGACG GCACCGTGGC CGACTTTGTG
GAAGTCACCG GTGGCTTCCT GAGCAAGCCC GAAGGGAAAG ACTACAACCT GGTCGGCCCA
GAGCTCTACA CTGAAAAATA CTTTGGTACT GGCGTCGGCA TCGGCCTGCG CAAGGGTGAA
ACAGCGCTCA AAAACGAATT GAATGCCGCC ATCAAGACGA TCCGTGCCAA TGGCACTTAC
AAGAAAATCA ACGACAAATA CTTCAAGTTT GACGTTTACG GCAAGTAA
 
Protein sequence
MKKLLLAIAI GSLCAVSFAQ GKDLKVAIDP TYEPFTFKTA DGKPTGFDVD IANALCEQVK 
RKCVFVEQVW DSMIPGLQAK KYDVIISSMS ITADRLKVID FTNKYYNTPS RIVVKKDVKF
DGPASLKGKK LGVLKGSTQE KYAMGELKTV GVEVVPYEAQ DQVYLDIKSG RLDGTVADFV
EVTGGFLSKP EGKDYNLVGP ELYTEKYFGT GVGIGLRKGE TALKNELNAA IKTIRANGTY
KKINDKYFKF DVYGK