Gene Rfer_1512 details

Gene Information

• Locus tag: Rfer_1512
• ID: 3961127
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: -
• Start bp: 1627836
• End bp: 1629671
• Gene Length: 1836 bp
• Protein Length: 611 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637916332
• Product: ABC transporter related
• Protein accession: YP_522776
• Protein GI: 89900305
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components
• TIGRFAM ID: [TIGR02204] ABC transporter, permease/ATP-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.00861332
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAAGGC GTTGTTTGGC GCAGCAATGG TTTATGCGCT TTTTGGCTAA ACTGCGGCTC 
ATGCCCAAGC CCACGCCCCT CAAAGCCTCG CCGCGTTCCT TGTCCGGTCT GCTGCCTTTT 
CTGATGCCCT ACCGTGGCCG CATTGGGCTG GCGCTGGCAT TCTTGGTGCT GGCAGCGACG 
GCCACGCTGG CTTTTCCGTT GGCTTTGCGC AGCCTGATCG ACGCGGGCCT GGTGCAATCG 
GACAAAGGCG CGCAGATGAT GGCCCTGCGC CAGCACTTTG TCGCCCTGTT TGCGGTAGCG 
GTGGCGCTGG GCCTTTTTTC GGCGGCGCGC TTTTACATGG TGAGCTGGCT CGGGGAGCGT 
GTCACGGCCG ATCTGCGCAA TGCGGTCTAC ACCCACGTGC TGCAGCAAAG CCCCGAATTC 
TTTGAGACCA CGCAAACCGG CGAGGTCTTG TCGCGCCTAT CGGCCGACAC CACGCTGGTG 
CAGACGGTGG TGGGCTCGTC GCTGAGCATG GGCTTGCGCA ACACGGTGAT GGGCATCGGT 
GCCCTGGGCA TGTTGATCTG GACCAATCCG TATGTCATGC TGCAGGTGCT GACCCTGCTG 
GTGCTGGTGA TTGTGCCGTC GCTGTGGTTT GGCCGGCGCG TTCGCAAGCT CTCGCGCGCC 
AGTCAGGACC GGGTGGCGGA CTCCAGCGCC ATTGCCGCTG AGGTGCTGAA CGCCATTCCC 
GTGGTGCAAA GCTACACCGC CGAGGAGCGC GAATCGGCGC GCTTCAACGC CTCGACCGAC 
AGCGCTTTTG AGACTGCGGT CAAACGCACC CGGGCGCGCT CGGTACTGGT GGCGTTCATC 
ATCATTGCCA CTTCGGCGGC CCTGCTGTGG GGCTTGTACC AGGGCACGCA AGCGGTGATA 
GCCGGACGCA TCAGCGCCGG CGATTTGGGC CAGACGGTGT TGTACGTCAT CATTTTGGCC 
AGTGCATTTG CGATTCTGGG CGAGGTTTAT GGCGACTTGC TGCGCGCCGC CGGCGCGACC 
GAACGGCTGA TGGAGTTGCT GAAAAGCCAG TCGCCCATCA CTTCACCATC AAACCCGGCC 
CTAGCCCCTG TTCAGCTTGA TGGAAGCGCT ATTAAATTTG AAGATATCCG GTTCAACTAT 
CCATCCCGCC CGACGCAGGC TGCGCTGACA GATTTCTCGC TGGAAGTGAA ACCGGGCCAG 
ACGGTGGCCC TGGTCGGACC CAGTGGCGCG GGCAAGAGCA CCGTGTTTCA ATTGCTGCTG 
CGCTTTTACG ACCCGGGCGC AGGACAGATC GTGCTGGACG GCGTGGCAAC ACGCGACCTG 
TCCTTGCACG ACCTTCGCCA GCGCATCGGC ATCGTGCCGC AGGACGCGGT GATCTTTTCC 
AGCAGCGCAC TGGAGAACAT TCGCTATGGC AGGCCTGAAG CCAGCGACGC CGAGGTCAAA 
GCGGCGGCGC AAGCAGCCTT TGCCGACGAA TTCATCAATG CCCTGCCGCA AGGTTATGAC 
ACATTTCTGG GCGAGCGCGG TGTGCGCATT TCGGGTGGCC AGCGCCAGCG CATTGCGATT 
GCCCGCGCCA TGCTGAAGAA CCCGCCGCTG CTGCTGCTGG ACGAAGCCAC CAGCGCGCTC 
GACGCCGAAA GCGAACGCAT GGTGCAAGCA GCCCTGGAGA GCGCCATGCG GGGCCGCACC 
ACCCTGGTCA TTGCGCACCG CCTGGCCACG GTCATCAAGG CTGACCACAT TGTGGTGCTC 
GACCACGGCC GGTTGGTCGA GCAAGGTACG CACGCCGAAC TGGTGGCGTA CGGTGGCGTG 
TACGCGGGCC TGGCGGCCCT GCAATTCAAC GCTTGA 

 

Protein sequence

MSRRCLAQQW FMRFLAKLRL MPKPTPLKAS PRSLSGLLPF LMPYRGRIGL ALAFLVLAAT 
ATLAFPLALR SLIDAGLVQS DKGAQMMALR QHFVALFAVA VALGLFSAAR FYMVSWLGER 
VTADLRNAVY THVLQQSPEF FETTQTGEVL SRLSADTTLV QTVVGSSLSM GLRNTVMGIG 
ALGMLIWTNP YVMLQVLTLL VLVIVPSLWF GRRVRKLSRA SQDRVADSSA IAAEVLNAIP 
VVQSYTAEER ESARFNASTD SAFETAVKRT RARSVLVAFI IIATSAALLW GLYQGTQAVI 
AGRISAGDLG QTVLYVIILA SAFAILGEVY GDLLRAAGAT ERLMELLKSQ SPITSPSNPA 
LAPVQLDGSA IKFEDIRFNY PSRPTQAALT DFSLEVKPGQ TVALVGPSGA GKSTVFQLLL 
RFYDPGAGQI VLDGVATRDL SLHDLRQRIG IVPQDAVIFS SSALENIRYG RPEASDAEVK 
AAAQAAFADE FINALPQGYD TFLGERGVRI SGGQRQRIAI ARAMLKNPPL LLLDEATSAL 
DAESERMVQA ALESAMRGRT TLVIAHRLAT VIKADHIVVL DHGRLVEQGT HAELVAYGGV 
YAGLAALQFN A