| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1461 |
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| Symbol | |
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| ID | 3962909 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 1571071 |
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| End bp | 1572600 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637916279 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_522725 |
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| Protein GI | 89900254 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0063107 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTTC TGAAACTTGC CTGCCTGAGC GGCCTGCTGT GGCTGACCGG CTGTGCCAGC
ACCGGCATTA CATCCCTGTC AAATCCGGAT GCCATCCACG GGCCGAGCAC CGCCACGTCA
GGAAATCAGG CCGCCGGTGC CTACGGTTCA CTCATTCCGA GTGGCGAGTT GCAGCCCATC
ACCGCCGCGC AAGCCGCCTC CCGGGCGGTC ACTGAACTGG CAGCGCCCGC GGATATTTGG
GAACGTATCC GGCGCGGCTA TGGCATGCCC AATCTGGAGA GTGACCTGGT CGTTGATCGC
GAGCAGTGGT ACACGACCCG GCCCGACTAC ATCCTGCGCA TGGCGGAGCG TTCCAACAAG
TACTTGTTCC ATATTGTGGA AGAACTGGAG CGGCGCAACA TGCCCTCCGA ACTGGCGCTA
CTGCCTTTTG TCGAGAGCGC CTTCAACCCG CAGGCAGTTT CCACAGCCAA GGCAGCCGGC
ATGTGGCAAT TCATGCCCGC GACCGGCAAG AGCTTCGATT TGAAACAGAA CGCGTTTCGC
GATGACCGGC GCGACGTGCT GGCCTCCACC CGTGCGGCAC TGGACTACCT GCAAAAACTC
CATGACATGT TTGGAGACTG GGACCTCGCG CTGGCCGCCT ACAACTGGGG TGAAGGCAGC
GTCGGGCGCG CCATTGCCAA AAACAAGCGG GCCGGCCTGG GCCTGTCCTA CACCGATCTC
AGCATGCCGG CGGAAACCCG TCTTTACGTG CCCAAGCTGC AAGCCATCAA AAACATCGTG
GCCAACCCGA TGGCGTTCAA CACACGGCTG CCCCTGATTG GAAACCACCC TTACTTTCAG
ACCGTGGATA TCAAGCACGA TATCGATGTC GCGCTGGTGG CCAAACTGGC TGAAGTGACG
GTCGAGGACT TCAAGGCGCT GAACCCGTCC GGCGGCAGTC GCCCGGTCAT TCTGGCGGCC
GGCACACCGC AAATCTTGCT GCCCTGGGAC AACGCCATCA TCTTCCAGAG CAACCTGGAG
GCCTTCGGCG GCGGCCGTCT GGCCAGCTGG ACGGTCTGGC GGGCTCCCTC CACCATGAAA
CCGGCCGAGG CCGCCAAACG GGTTGGCATG ACGGAGACCG AACTGCGCAG CGTGAACAAA
ATTCCGCCCC GGGTGGCGAT CAAGGCCGGC TCCAGCCTGC TGGTGCCACG GCCCACCCAA
CTGGTCGCCG ACGTGGCCGA ACATGTGGCT GACAACGGCC AGTTGTCTTT TGCGCCCGAT
GCGATATTGA CGCGCACCGT GCTCAAGGCT GGCAAAAAAG ATTCGGTCGC CAGCCTGGCC
AAGCGCTACC GGGTCAGTCC GGCCAGCGTC GCCGAGTGGA ACAAGGTCAG CGCATCTGCA
ACTTTCAAGG CCGGGCAACG TGTGGTGATG TTTCTGCCGA TGCGGGCCAA AACCTTGGCT
CAAAGCAAGG CCCATGGCAG AACCCAATCA TCAAGCAAAC AGGCCCGAAA CAAGGTGAGC
AAGCCGACCC GGCTTGCCAA ACAACCTTAA
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| Protein sequence | MKFLKLACLS GLLWLTGCAS TGITSLSNPD AIHGPSTATS GNQAAGAYGS LIPSGELQPI
TAAQAASRAV TELAAPADIW ERIRRGYGMP NLESDLVVDR EQWYTTRPDY ILRMAERSNK
YLFHIVEELE RRNMPSELAL LPFVESAFNP QAVSTAKAAG MWQFMPATGK SFDLKQNAFR
DDRRDVLAST RAALDYLQKL HDMFGDWDLA LAAYNWGEGS VGRAIAKNKR AGLGLSYTDL
SMPAETRLYV PKLQAIKNIV ANPMAFNTRL PLIGNHPYFQ TVDIKHDIDV ALVAKLAEVT
VEDFKALNPS GGSRPVILAA GTPQILLPWD NAIIFQSNLE AFGGGRLASW TVWRAPSTMK
PAEAAKRVGM TETELRSVNK IPPRVAIKAG SSLLVPRPTQ LVADVAEHVA DNGQLSFAPD
AILTRTVLKA GKKDSVASLA KRYRVSPASV AEWNKVSASA TFKAGQRVVM FLPMRAKTLA
QSKAHGRTQS SSKQARNKVS KPTRLAKQP
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