| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1427 |
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| Symbol | |
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| ID | 3963201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 1535702 |
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| End bp | 1537999 |
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| Gene Length | 2298 bp |
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| Protein Length | 765 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637916244 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_522691 |
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| Protein GI | 89900220 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCGCT TGAAGTTGCC ACGAATCACA GTCTGGGTGC TGGGGCTGGC GGGTGCGTTC
CTGCTGTCGC TCGCGCTGGC CGCCGCCAGC CTGGTGTGGT CGCTCAAGCA GGCCGCCGTG
AACGAGGCCG AAGCTGAAGC CGCACGCTTT GTCAGTGGTG CCGTGGTGGC ACTTAACCGA
AGCCTGCTGG GCGTGGATGT GTTGCTTGCC AGCCAGGACG AGCAGCTGGG CCTGTCACTG
CTGGTGCCGG ACTGGATTGA TTCCGCCGCG GCCAGCCGAC AGATGCATGG CACCGTGCAG
CAAAACCTGA TGGTGCGCCA TCTCGCGCTG CTCGATGCTC AGGCCCACGT GTTGGCCTCA
TCGGATGTCG ATGGTGTCGC CCTGGACTCC TGGCTGCCAG CCGGCTTTGT GGCGCAGGCG
TTGGCACAAC CCATGTCGGA GTTGAGCATC AGCGCACCGG TCGTCAATTT CGCCAGCTCA
GAGCGGGTTA TTTACTTTGG GCGCCCCATC AAACTGGCCG ACAATTCCAG AGTGCTGGCG
GTGGCCGAGG TACAGGTGTC ACTGCTCAAT GCCATCCTGA GCCAGGGTGT CAGCATCAGT
GGGCTGGAAA TCACGCTCGA GCGCGGCGAC GGGCAGTTAC TGTCGAGCGA ACCGGCTCAG
GAGCAACTGT GGGGCACACA ACTGTCGCCG CCGCTGGGCC AAGTCGGCAC GCAAAAACAG
GTGCTACGCG GGGCGGCACG GCTCAGCGGC CAGGCCGCCA TCGTACTGGC ACAACCAACT
TTGTATCGCG ATATCTTCAT TGCCGCCAGC ATCCCGATCG ATGCCGTGCT GGCGAACTGG
CGCGAGCAGC GCAATTTCAT CCTGGGCGTA TCGCTGTTGT TTGCCTTGAT GATTCTGGCC
TCCGGCGGCT TGGCCCTGTG GTACCTGGAA CGCCTGGCAC AGGCCCGCCA GGCCATTGCC
TCGTCGAAGG CCGAGATTGA GCAACTGGCA TTTTTTGATC CCTTGACCAA CTTGCCAAAC
CGCAGATTGT TGATGGACCG GCTGCAGCAT GCCCTGAGCG CCAACGCGCG CAGCGGCCGC
TGTGGTGCCC TGCTGTTTCT GGATCTGGAC CACTTCAAAA CCCTCAACGA CACCTTGGGG
CACGAAGTGG GCGACCTGCT GCTGCAACAG GTTGCCCAGC GCTTGAAGAC CTGCCTGCGC
GAACAGGACA CAGTCGCGCG CCTGGGTGGC GACGAGTTCG TCGTCATGCT CGAAGACCTG
GCCGAGCACA GCCTGGAAGC CGCCGCCCTG GCTCGGCGCA TCGGCGAAAA GATTCTGGCA
TCTCTCAACC AGCCCTACGT GCTGATGACG CAAACTTACC GCAGCACCTG CAGCGTGGGC
GCTGCCCTGT TCGAGGCCAC AACGCCCATT ACGGCGGCAG ATTTGCTCAA ACAAGCCGAT
ATCGCCATGT ACCAGGTAAA AGCACGCGGA CGCAACGACC TGTGCTTTTT TGACCCGCAG
ATGCAAGCCA GCATCACGGC CCATGCCCAG CTTGAAGATG ATTTGCAGGC CGCACTGGTG
CGCGGCGAGT TTGCGTTGTA CTACCAACCC CAGTACCAGC TGCAGGAAGG TGTGGTCGGG
GCCGAGGCCC TGATCCGCTG GCTGCATCCG CTACGCGGCC TGGTGCCACC GGTGGAGTTC
ATCGCGGTGG CGGAAGAGAG TGAATTGATC AACCAGATCG GCCTTTGGGT GCTGCGCACG
GCCTGCCAGC AACTGGCGCG CTGGCAAGGT GATCCTCGGG CCTGCGATTT ACATCTTGCG
GTCAACGTCA GCGCGCGCCA GTTTCGCCAA CCGGACTTTG TGGCGCAAGT CAGCACCGTC
GTGCACGAGT CCGGCATCAA GCCGCACCTG CTCAAGCTGG AACTGACGGA GTCACTGGTG
CTGGACAACG TGATGGACAC CATTGCCAAG ATGAACGAGT TGAAAGACCT GGGGGTGCGG
TTCTCGATGG ACGACTTTGG CACCGGGCAG TCCTCACTGT CTTACCTCAC CCGGCTGCCG
CTGAACCAGC TCAAAATCGA TCAGTCCTTT GTGCGCAACA TTGGCCTTCA GGCCACCGAT
GATGTCATTG TTCAAACCAT CATCGGCATG GCGCGCAGCC TGGGTCTGAG CGTGATTGCC
GAGGGCGTCG AGACGCCGGC GCAGCAAGAA TTCCTGGCGC TGCATGGCTG CACCCTGTAC
CAGGGCTACC TGTTCGGCAA GCCCACTGCC CTGCCCGACT TTGAAGCCCT GTTGGGCGCA
GCACCGGCCC TGCCTTGA
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| Protein sequence | MTRLKLPRIT VWVLGLAGAF LLSLALAAAS LVWSLKQAAV NEAEAEAARF VSGAVVALNR
SLLGVDVLLA SQDEQLGLSL LVPDWIDSAA ASRQMHGTVQ QNLMVRHLAL LDAQAHVLAS
SDVDGVALDS WLPAGFVAQA LAQPMSELSI SAPVVNFASS ERVIYFGRPI KLADNSRVLA
VAEVQVSLLN AILSQGVSIS GLEITLERGD GQLLSSEPAQ EQLWGTQLSP PLGQVGTQKQ
VLRGAARLSG QAAIVLAQPT LYRDIFIAAS IPIDAVLANW REQRNFILGV SLLFALMILA
SGGLALWYLE RLAQARQAIA SSKAEIEQLA FFDPLTNLPN RRLLMDRLQH ALSANARSGR
CGALLFLDLD HFKTLNDTLG HEVGDLLLQQ VAQRLKTCLR EQDTVARLGG DEFVVMLEDL
AEHSLEAAAL ARRIGEKILA SLNQPYVLMT QTYRSTCSVG AALFEATTPI TAADLLKQAD
IAMYQVKARG RNDLCFFDPQ MQASITAHAQ LEDDLQAALV RGEFALYYQP QYQLQEGVVG
AEALIRWLHP LRGLVPPVEF IAVAEESELI NQIGLWVLRT ACQQLARWQG DPRACDLHLA
VNVSARQFRQ PDFVAQVSTV VHESGIKPHL LKLELTESLV LDNVMDTIAK MNELKDLGVR
FSMDDFGTGQ SSLSYLTRLP LNQLKIDQSF VRNIGLQATD DVIVQTIIGM ARSLGLSVIA
EGVETPAQQE FLALHGCTLY QGYLFGKPTA LPDFEALLGA APALP
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