Gene Rfer_1403 details

Gene Information

• Locus tag: Rfer_1403
• Symbol: rimM
• ID: 3962321
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 1513272
• End bp: 1513835
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637916219
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_522667
• Protein GI: 89900196
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTGCCTG GCCTTGAAGC CGCCGAATTG CCGGCGGATG CGATCGAAGT CGGGCGCATC 
GCGGATGCCT GGGGCATCAA AGGCTGGTTC AAAGTCCTGC CCTACAGCGC CGATCCCGAG 
GCGCTTTTTT CTGCCCGGCG CTGGTTTCTG CTGCCAGCCG AAAAAGGTGC AAAAACTTTC 
TCTGGTGTGG CCCAACTGGC GATCAAGGAA GCCAAGGTGC ATTCAGACAC CGTGGTCGCG 
TCAGCCCAAG CAGTGGATGA CCGCACTGCC GCTGAGGCTT TGCGCGGGGC GCGTATTTTT 
GTGGCCCGCT CCAGTTTCCC AAGCGCAGAA AAAGACGAAT ATTACTGGGT TGACCTGATT 
GGGCTGAACG TGGTCAATCG CGAGGGTGTG GCAATGGGCA CGGTGAAAGA ATTACTCTCG 
ACCGGGGCTC AGACCGTGCT GGTGCTGGAG TACTCGCAAG ATGGCAAGGC GCAGGAGCGG 
ATGATTCCTT TTGTCTCGGT TTATATCGAC GAGGTCGATT TGCCCGGTCA TCGCATTCTG 
GTGGATTGGC AAGCGGACTT CTAA 

 

Protein sequence

MLPGLEAAEL PADAIEVGRI ADAWGIKGWF KVLPYSADPE ALFSARRWFL LPAEKGAKTF 
SGVAQLAIKE AKVHSDTVVA SAQAVDDRTA AEALRGARIF VARSSFPSAE KDEYYWVDLI 
GLNVVNREGV AMGTVKELLS TGAQTVLVLE YSQDGKAQER MIPFVSVYID EVDLPGHRIL 
VDWQADF