| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1375 |
|---|
| Symbol | |
|---|
| ID | 3960199 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1482881 |
|---|
| End bp | 1488547 |
|---|
| Gene Length | 5667 bp |
|---|
| Protein Length | 1888 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637916192 |
|---|
| Product | CheA signal transduction histidine kinases |
|---|
| Protein accession | YP_522640 |
|---|
| Protein GI | 89900169 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTAA ACGCTGCCCC GACCGGCACC AGTGAACCGG TGCCCCACGA CCTTGGGCCT
TTGGCCTGGG TGCTCGAAGA GCTGCGTAAG TCGTTGAGCG GTGCGACCAA AGCCCTTCGC
CGGTTCGTCC GTGATGCCGA GTTGGCGCGA GGTTCTGATC TGGCTGCGCT GGACGCCAGT
CAGTTGCGCA TCGCCCGCCA GCAATTGCAT CAGGCGGTTG GCGCCCTGGA GATGGTCGGC
ATGGCTGTGC CGGCCAAGAT ATTGCGATCG ATGGAAGCGC TGGCGCAGCG ATTTGTGCAG
CGCCCCGAGT TGTGCAGTGA CGAGGCCGCT AACAAGGTAG AGCGTGCCAG TTTTGCCCTG
ACTGAATATC TGGAAGGGGT TCTCAAAGGG AAAAACGCTT CGCCGGTGGC CTTGTTTCCC
CAGTACCGCG ATGTTTTGGA GCTGGTGGGC AATGATCGTG TTCATCCTGC GGACTTGTGG
CCACTCGAAT TGCGCTGGAT TGACGTCGTT TTGCCACAAG AAGCGTTGGC GCTTGGCTAT
GATTCATTGG TTCGCACCCG CCTTGATAAG GCAGTTCTGC AAATCGTCAA GTCAGGCGAC
GTCGCCGCTG CACAGACCAT GCGCGGTATC AGTCTGGGGT TTGCAGCGGC CCAAGAGACA
TTGGAAGCAC GCGTTTTTTG GAAGATTTCT GCGGCCTATT TTGAAGCTCT GTCCTTGGGT
CTGTGCCCGC CGGATGTTTA CGGCAAGCTG GCAGCTTCCC GAATCCTTCA TCAATACAGG
ACCCTGGCGC GAGGCGAACC GGGAATTTCC GAGCGATTGG TGCAGGATTT GTTGTTCTTT
TGTGCACAGG CGGTGCCTGC TCAGGCGGCT GATGCGCCCG TACTGGCTGC GGTTCGTGCT
GCGTATGGGT TGACCCAGAC GAAATCATTT GATTACGAAC GGCCTCAGTT TGGACGTTTC
GATCCAGCGC TACTGGTTCA GGCCCGCAAG CGTATTGCGG CCGCCACCGA AACCTGGTCC
GCGTTAGCCG GGGGCGATAC CAATCGCTTG AAGGTGGCCC TTGACCAATT CACTCTGGTG
ACCGATTCAG TATTGAAAAT GCATCCCGAG AGTGCCGATT TGGTGCGGGC ATTGACGCAG
GCGATTGAAA AGACGGCGCT ATCTGGTGAG GCGCCTGCCC CCGCACTTGC CATGGAAGTT
GCAACCGTTG TGCTGTATCT TGAGGCCGCC TATGACGATC TGGATCCGAC CGACTCGCAG
ATGAAAGAGC GCAGTGCCAG TCTTGCAGCC CGGATGGAGA ATGTCAACGC GGGCGGGCAA
CCGGAGCCGC TCGAGGCTTG GATGGAGGAG TTGTACCGCA GGGTCAGTGA TCGTCAGATC
ATGGGTAGTG TCGTTGACGA GTTGCGAATG ACGCTTGGGG GCGTTGAAAA ATCGCTGGAT
TCATTCTTTC GTAATCCTCT TGATAAGGTT CCTTTGCACG AGGTGCCTAG TCAGCTGGCA
CAGATGCGGG GAGTCTTTTC GGTTTTGGGT CTTGATCAGG CAGCCCTGGC AACGCTGCGC
ATGCGTGACA GTGTCGAGAA ATTTCTGGTT GACGATATTG ACGCTGATGC TGCGCGAGCG
GGCGTTTTTG AAAAGCTGGG CAACAGCCTG GGGGCCCTCG GGTTTCTGAT TGACATGCTG
AGTTACCAGC GCACGCTGGC CAAGAAACTC TTTGTGTACG ACGAGGACTT GGGTGAGTTC
AAGCCCTTGA TGGGGCGTGA AAAGACGGGC GATCGGACCG CAGAGAGCCC GTCGGTGCCT
GGCGTTGACA AGGTTTCCGA CAATGCGCTG GCTGCCGTGG AAGCGCCTCC TGAGAGCTTG
TCGGCAGCAG TTCCTGCCGA AGAGCCAGCT CCGGCGCTGG TCTTGGCGCC AGAACCGGTC
ACCCTGGTGC TGGCCGAGCC GGCAGACGAT GACGATGAGA CTGACTTGAA GGATATCTTC
CTTGAAGAAG CGCGTGAAGT GCTTCATGCC GGGCTTGAGG CGATCGCCGC ATTGGCAGAC
GAGCCCGCAG ATATGGGGCA ACAGACGACA TTGAGGCGCG CTTTTCATAC GCTCAAAGGC
AGCTCACGCA TGGTGGGCCT CAGTGAATTT GGTGAAGCAG CCTGGTCCCT GGAGCAGTTG
CTCAATACCT GGTTGGCCGA GCAAAAGCCT GCCAGCAGTG AACTGGTCAG ACTTGCAGAC
AGGGCCCTGC ACGGCTTCGA CCGTTGGGTC GAGGATATTG CAGCAGGAGA AGATGCGAAG
TGGAATGCGC AGGCCTTTCG CAAGGCTGCT GACGGTTTGC GCCTTGATAA CACCGAAGTT
GAATTTTTGT TGCCGGGTGA AGAGGTGCAG AGCCCAGCCC CGGAAGAGAC CCCGCATGCC
GATTTCGTTT CGACACAAGT TATTGATCTG GACTTGACGC AGACTTTTGA TGTCAATCTC
GCCTTGGCGG TCGATGGCGG TTCGGGATTG TCCTCGGCGG CTCGGGTCCC GGATGAGCCG
CTGGCACTTG ACGACTTCGA TTTTGGTGTT GGCGCTGACT GGACGCCGTC ACCTGATGAG
GCCGCAGTTG TTCCGGACAT TTCGGACGAA GTGGAGACGT TCGCGGCCGA GCTTGCTGTC
CCTGTGAGTG AAGCCGCCGA CGTTCAGCCT GAGCCTCAAC AGGCCAGTTT TTTAGATTTG
GATCTGGAAG AACAGGTCAA GGTTATCGGA TCCCTGCGCA TTGGTATCCC GCTCTACAAC
GTCTACCTGA ACGAGGCAGA TGAGTTGTCC CGGCGCTTGC TGACAGAACT GAGCGAATGG
GCTCTGGAGT TGCATCAACC GGTTTCGGAA ACGACGGTGG CACTGGCACA TTCCCTGGCT
GGCAGTTCGG CAACGGTTGG TTTTTTTGCC CTGTCCGAGA TGGCGCGGGC GCTGGAACAT
GCCTTGCAGC ATGTGCGGCT TCATGTTCAG GGCATTCCAG AGCACGCCCA GGTATTCATG
GCGGCGGCAG AGGATATGCG CCGCCTGCTG CATCAATTCG CAGCAGGATT CCTCAAGGAG
CCCGATCAGG CGCTGCTCGA CGCACTGAAG GCTATTCTGG AAATCGAATT CCCGGCCGTT
GCAGCGGGCG TTGTTGACAG CTTTTACGCT CAACTGGCGG ATGAGCCGGA AATTGCCGCG
CCGCCCGGCT TTGATCAGGT CACGGACAGT GTCGTGACGG AGTCAGAAGC AGAAGCAGAA
GCAGAAGCAG AAGCAGAAGC AGAAGCAGAA GCAGAATCGC TTGCAGAGCC GTTTGTATTG
ACGCCTGACG CCGAAGTCGA ACATATTGAT GCACTTGATG CGCTTGACGT TGACCTCTTC
CCGATTTTTG AGGACGAGGC GCTTGAATTG TTGCCGCAGC TCGGCGGCGC CTTGAGGCAG
TGGACGGCCC GCCCCGACAA CCTGGGTGCT CGAAATGAGG TGCTGCGGGT TTTGCACACG
CTCAAAGGCA GCAGTCGACT GGCCGGTGCC ATGCAATTGG GTGAGATGAC TCACCGCATG
GAGAGCGCGA TTGAACGGAT GGGGAGCGAA TCTTTGTCGG CGGCACAGCT GGAGCCCCTG
TTGGCTCGGT TTGATGCCAT GCAGGCCAAC TTTGACCAAT TGCGCGCAAC GCCGGAACAG
GCCTTGATTT TGCCGGAGGT CAGTGCGGCG CCCCAGGAGG AGATCGCCCC AGCCGGGCTC
GCCGAGGTGG CGGCTGCAGA GACCGAGCCG ACAAAATTGG TGGCGCCCGA TACATCGGGA
TTTATTACGC GGGCATCGCC ACGCCCGGGA GCTCAGCAAA CTGTGCGTGT GCGTTCACAG
CTGCTGGACC GCCTGGTGAA TCAGGCGGGA GAGGTGATGA TCACGCGGTC CCGGATGGAG
GCTCGCTTGG GGCAGTTGCG TGGGTCATTG GGTGAACTTA CCGGCAATCT GGATCGCTTG
AGAAATCAGT TGCGCGATAT CGAGGTGCAG TCGGAGTCCC AGATGCAGTC GCGGCTGGCA
CAGGCCAAGG ACACCGCGCA GGGCTTTGAT CCGCTGGAAT TTGACCGCTT TACCCGGGTG
CAGGAACTCA CCCGGATGAT GGCTGAATCA GTGCATGACG TCGCGACGGT GCAACGTAAC
TTGCAGCGTG CGGTGCAGGG GAGTGAAGAC GATCTGATCG CCCAGGGGCG CCAGGCCCGT
GAATTGCAGC GCGACCTGTT GCGCACTCGA ATGGTGGAGT TCGACGGAAT TTCAGACCGT
CTGTACGGCG TTGTTCGCCA GGCATCCAAG GAAGCGAACA AGCAGGTCAA GCTCGACATC
AAAGGGGGGT CTCTGGATAT GGATCGCGGC GTGCTGGATC GCATGGCGCC CGTTTTTGAA
CATTTGCTGC GCAATTCGGT GGCACATGGT ATTGAGGACT CGTCGCTGCG TGTGGCAGCG
GGGAAACCGA TGATCGGTAG CATTGGCATT CATCTGCAAC AACAAAGCAA TGATGTCACG
GTGGAGTTCA GTGACGATGG CGCCGGGCTG GACCTGGACC GGATCCGGGA AAAGGCACGG
GCCAATGGTC TGATGCCGCA GGATGGCACA TTGACCGATG ACGAGGCCGC CGATCTGATA
TTTACCCCTG GCTTTTCCAC CGCCGAGCAG ATCACCGAGT TGGCCGGTCG CGGCATTGGC
ATGGACGTCG TGCGCTCCGA AGTCAGCGCG CTGGGTGGCC GCATTGAAAC TTCGACCGAA
CGTGGACAGG GAACGAAGTT CAAGCTGGTG CTGCCGCTTA CCACTGCGGT GACGCAGGTG
GTCATGTTGC GCATCGGCGA GTTGGTGGTT GGCGTGTCGG CGAATCTGGT TGAGATGGTA
CGGCGGGTGC CGATTGCCGA TCTTGAGCGC GCCTATCAGG ACCATGTCTT TGCATATGGT
GGCGAGCAGG TGCCGTTTTT CTGGGGTGGT GCTCTGCTGC AGGCATCGGC GCACAGCAAC
GAGGCCGTCA CCAAGACGCT GCCGGTGGCT ATTTTCCGCA GTGCCGGTCA AAGAATTGCG
GTGCACTTCG ATGAAGTGTT GGGTAATCAG GAAGTGGTGG TCAAAAACCT CGGACCTCAA
TTGTCCCGTC TGCCGGGCCT GACCGGTATG TCGGTGTTGG CCTCAGGTGC GGTGGTCTTG
ATCTACAACC CGGTGGCCCT GGCTTCCGTT TATGGCGAGC GAGCGCGGCA CCTCAGTCTG
GATGCAGCGC AGGCTGTGGA CCAAGCCGCC ACAGCATCAC AGGCGTCGTC GCTGACCAGT
GTCAATCAGG CGCCCCTGGT GTTGGTGGTT GACGATTCGA TCACGGTGCG CCGTGTCACC
CAGCGCCTGC TCAAACGCGA AGGCTTTCGG GTGGCTCTGG CCATCGATGG TCTGCAGGCG
CTGGAGCGTT TGCAAGAGGA AAAGCCGGCG GTTGTTCTCT CTGACATCGA AATGCCGCGC
ATGGATGGCT TCGACCTGGT GCGAAATATC CGAGGTGATG CCAAACTGCG CGATCTTCCC
ATCATCATGA TTACCTCGCG TATTGCCGAG AAACATCGTG AACGCGCCCG TGAACTCGGT
GTTGATCACT ACTTGGGCAA ACCGTATTCA GAAGACGAAC TGATTGCTTT GGTGCGGCAG
TATTGCACCG CGGCTGTTGA GGCTTAA
|
|---|
| Protein sequence | MQVNAAPTGT SEPVPHDLGP LAWVLEELRK SLSGATKALR RFVRDAELAR GSDLAALDAS
QLRIARQQLH QAVGALEMVG MAVPAKILRS MEALAQRFVQ RPELCSDEAA NKVERASFAL
TEYLEGVLKG KNASPVALFP QYRDVLELVG NDRVHPADLW PLELRWIDVV LPQEALALGY
DSLVRTRLDK AVLQIVKSGD VAAAQTMRGI SLGFAAAQET LEARVFWKIS AAYFEALSLG
LCPPDVYGKL AASRILHQYR TLARGEPGIS ERLVQDLLFF CAQAVPAQAA DAPVLAAVRA
AYGLTQTKSF DYERPQFGRF DPALLVQARK RIAAATETWS ALAGGDTNRL KVALDQFTLV
TDSVLKMHPE SADLVRALTQ AIEKTALSGE APAPALAMEV ATVVLYLEAA YDDLDPTDSQ
MKERSASLAA RMENVNAGGQ PEPLEAWMEE LYRRVSDRQI MGSVVDELRM TLGGVEKSLD
SFFRNPLDKV PLHEVPSQLA QMRGVFSVLG LDQAALATLR MRDSVEKFLV DDIDADAARA
GVFEKLGNSL GALGFLIDML SYQRTLAKKL FVYDEDLGEF KPLMGREKTG DRTAESPSVP
GVDKVSDNAL AAVEAPPESL SAAVPAEEPA PALVLAPEPV TLVLAEPADD DDETDLKDIF
LEEAREVLHA GLEAIAALAD EPADMGQQTT LRRAFHTLKG SSRMVGLSEF GEAAWSLEQL
LNTWLAEQKP ASSELVRLAD RALHGFDRWV EDIAAGEDAK WNAQAFRKAA DGLRLDNTEV
EFLLPGEEVQ SPAPEETPHA DFVSTQVIDL DLTQTFDVNL ALAVDGGSGL SSAARVPDEP
LALDDFDFGV GADWTPSPDE AAVVPDISDE VETFAAELAV PVSEAADVQP EPQQASFLDL
DLEEQVKVIG SLRIGIPLYN VYLNEADELS RRLLTELSEW ALELHQPVSE TTVALAHSLA
GSSATVGFFA LSEMARALEH ALQHVRLHVQ GIPEHAQVFM AAAEDMRRLL HQFAAGFLKE
PDQALLDALK AILEIEFPAV AAGVVDSFYA QLADEPEIAA PPGFDQVTDS VVTESEAEAE
AEAEAEAEAE AESLAEPFVL TPDAEVEHID ALDALDVDLF PIFEDEALEL LPQLGGALRQ
WTARPDNLGA RNEVLRVLHT LKGSSRLAGA MQLGEMTHRM ESAIERMGSE SLSAAQLEPL
LARFDAMQAN FDQLRATPEQ ALILPEVSAA PQEEIAPAGL AEVAAAETEP TKLVAPDTSG
FITRASPRPG AQQTVRVRSQ LLDRLVNQAG EVMITRSRME ARLGQLRGSL GELTGNLDRL
RNQLRDIEVQ SESQMQSRLA QAKDTAQGFD PLEFDRFTRV QELTRMMAES VHDVATVQRN
LQRAVQGSED DLIAQGRQAR ELQRDLLRTR MVEFDGISDR LYGVVRQASK EANKQVKLDI
KGGSLDMDRG VLDRMAPVFE HLLRNSVAHG IEDSSLRVAA GKPMIGSIGI HLQQQSNDVT
VEFSDDGAGL DLDRIREKAR ANGLMPQDGT LTDDEAADLI FTPGFSTAEQ ITELAGRGIG
MDVVRSEVSA LGGRIETSTE RGQGTKFKLV LPLTTAVTQV VMLRIGELVV GVSANLVEMV
RRVPIADLER AYQDHVFAYG GEQVPFFWGG ALLQASAHSN EAVTKTLPVA IFRSAGQRIA
VHFDEVLGNQ EVVVKNLGPQ LSRLPGLTGM SVLASGAVVL IYNPVALASV YGERARHLSL
DAAQAVDQAA TASQASSLTS VNQAPLVLVV DDSITVRRVT QRLLKREGFR VALAIDGLQA
LERLQEEKPA VVLSDIEMPR MDGFDLVRNI RGDAKLRDLP IIMITSRIAE KHRERARELG
VDHYLGKPYS EDELIALVRQ YCTAAVEA
|
|---|
| |