| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1251 |
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| Symbol | |
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| ID | 3962028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 1344920 |
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| End bp | 1346023 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637916065 |
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| Product | NAD-dependent epimerase/dehydratase |
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| Protein accession | YP_522516 |
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| Protein GI | 89900045 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | [TIGR02622] CDP-glucose 4,6-dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.295037 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGCAA ATGTTTATAA AGAGAAGAAG GTGCTCATCA CCGGGCACAC AGGCTTCAAG
GGTAGCTGGT TGACAGCTTG GCTACTCAAG CTTGGTGCGC AGGTTGTCGG CTATTCAAAA
GATATACCGA CCACGCCCGC TATGTTTTCA GAGCTCAATT TAGCGGGCAA AATTCGGCAT
GTTGTGGGGG ATGTCCGCGA TTTGCCAGCC CTGCACCAAG TGATTATGCA AGAGCGACCA
GACTTTGTGT TTCACTTGGC AGCGCAGGCG ATTGTTTCTA CGTCTTACGC TGACCCCGTT
GAAACGATGA CCACTAACGT GATTGGCACG ATGAATGTGC TTGAGGCTTT GCGCGGGGTT
GACTTTGCCT GTGTTGCCAT TTTGATAACC AGCGACAAGT GTTATGACAA TGTGGAGTGG
GTTTGGGGCT ATCGTGAGAC GGATGCAGTA GGCGGTAAAG ATATTTACAG TGGCTCTAAA
GGGGCGGCAG AGCTGGTCAT CAAATCTTAT TTGAATTCAT TCTTTCAGGA TGGCAAGAGT
CAAGTCCGAA TCGGTATTGG CCGCGCTGGT AATGTGATTG GTGGTGGTGA CTGGGCGCGC
GATCGCATTG TGGCGGACAT CATGCGCGCT TGGCACGAGG ACAGAACGGT TGAGATCCGC
AGCCCCAACG CAACCCGCCC CTGGCAGCAT GTGCTGGAGC CCTTAAGTGG TTATCTCACT
CTGGGCATGC ACCTACATCA ATCAGCCAAG CTGCATGGTG AGGCGTTTAA TTTTGGCCCG
CGAGCAGAAC AGAATCGAAC TGTCGTGGAC TTGTTAACTG ACCTAAGTCA ACGGTGGGGC
TTCACTGACC CGACAAGAGC GTATCAAGTG ACTGGCAACA TTCCGTTTTA CGAGGCAAGT
TTGCTCAAGC TTAACTGCGA CAAAGCCTTG TTTCATTTGA AGTGGGAACC GAACTTGGTT
TACCCACAGA CAATCGGCTT TATCGGCGAT TGGTACCGCG CATTTTATAA GGAACAAGCG
GATATGCTGG AAGTAACGTT GCGACAAATT GGACTCTATG AAGAAATTGC GGTCAAAGAA
ATGAAAGTGT GGGCAGTGCA ATGA
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| Protein sequence | MFANVYKEKK VLITGHTGFK GSWLTAWLLK LGAQVVGYSK DIPTTPAMFS ELNLAGKIRH
VVGDVRDLPA LHQVIMQERP DFVFHLAAQA IVSTSYADPV ETMTTNVIGT MNVLEALRGV
DFACVAILIT SDKCYDNVEW VWGYRETDAV GGKDIYSGSK GAAELVIKSY LNSFFQDGKS
QVRIGIGRAG NVIGGGDWAR DRIVADIMRA WHEDRTVEIR SPNATRPWQH VLEPLSGYLT
LGMHLHQSAK LHGEAFNFGP RAEQNRTVVD LLTDLSQRWG FTDPTRAYQV TGNIPFYEAS
LLKLNCDKAL FHLKWEPNLV YPQTIGFIGD WYRAFYKEQA DMLEVTLRQI GLYEEIAVKE
MKVWAVQ
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