| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0895 |
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| Symbol | |
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| ID | 3963611 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 935309 |
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| End bp | 937414 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637915723 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_522174 |
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| Protein GI | 89899703 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCTGC CAGGCTCTCT CTGCGCCAAC AAGGGCCGGA TTCTGGTCGT GGAAGACGAA
ATGATCGTTG CGCGTGACAT CGCGCAACAA TTGGTGGCAC TCGGTTATCA GGTGGTGGGC
CATGCCACGC GGGGGCAAGA AGCCATTGAT CTGGCCGGGG CACTGCAGCC GGAGCTGGTG
TTGATGGACA TTCAACTCGC TGGCGCCATG GACGGCATTG CCGCCGCCCA GGCCATCCGC
CTGCAATTTT TACTTCCGGT GGTGTTTATC ACCGCTTTTG CCGCCGACGA GGTACTGGCG
CGTGCCAAGT TGACGGAACC GTTTGGCTAC ATCCTCAAAC CATTCTCCGA ACGCGAGCTG
CGTACCGTGC TGGAGATGGC ACTCTACAAG CATCAGGCCG ACAGCCAGGC ACGCGACGCG
GCCCGGCACA CGCAGGCCAT TCTGGACGGT ATGGTCGACG GCGTCATCAC CCTCAACGCG
CAGGGCCTGA TAACCTCGAT CAACCAGGCC GTCAGCACCC TGTTTGGTTA TGCGCCCGAG
GAACTCCTGG GGCACAACGT CGCGATGCTG ATGCCCAGTC CCCATCGCAG CCTGCATGGC
GGCTACCTGC GACGCCATCA GCACACGGGT GCGGGCTGCG CGATGGGCCA AGGGCGAGAG
GTCGACGGCC AGCGCCGCGA CGGCAGCGTT TTCCCCATCA GCGTGTCGGT CTCCGAACTC
ATGCACAACG GTCAGACTCA GTTCATCGGT CTGGTGCATG ACATCACGCA ACGTCGACGC
AGCGAAGAAA ACATCTACCG GCTGGCTTTT TACGACAAGC TCACGGGCCT GCCCAACCGG
CGTTTGCTGA TGGACCGCCT CAAGCAAGCG CTCATTACGT CCACCCGAAC GGGTCAGCAC
GGCGCCCTGA TCCTGCTCGA TCTGGACCAC TTCAAACAGA TCAATGAGAC GTTCGGTCTC
GACGCTGGCG ACGAACTGCT GCAGCAGGTG GGCCAGCGCC TGCCGACTTG CGTGCGGGAC
GATGACACGG TGTCGCGTTT CGGTGGCGAC GAATTCATGG TGATGCTTGA AGCCCTGAGC
AGCCAGCCTC AGGAGGCGGC AATTCAGGCC GAAGCCATCG CTCAAAAAAT TCTCTTGGCC
CTGGCGCAGC CCTACCGATT GCGCGGGCAC ACCCATGGCA CCACACCCAG CATTGGCGTG
GTTATGTTCC GGCAGGCGCA AGTCAGCTTG GACGATCTGC TCAAGATGAC TGACGTCGCC
ATGTACCAGG CCAAAGCCGC CGGGCGCAAC ACTGTTCGTT TTTTCGACCC CGCCCTGCAA
GCGCTGGCGC TGGCGCGCAC CGCGCTGGAA GAAAACCTGC GCCGGGGCCT TGCCCTGCAG
GAATTTGTGC TGCACTACCA GATTCAAGTC GACCATCAGG GCCTGCCCAC CGGGGCTGAA
GCGCTGCTGC GCTGGCAACA CCCGGTCCGT GGCATGGTGC CGCCGGCCCA GTTCATCCCG
CTGGCCGAAG AAACGGGCTT CATCCTCCCT CTGGGCCAAT GGGTTCTGGA GAGCGCCTGC
CGACAATTGG TGGCGTGGTC CCACCAGCGG GCAACCGGGT CTTGGACCCT GGCCGTCAAT
GTGAGCGCGC TGCAGTTCGC CCAGCCCGAC TTTGTGGCGC ATGTCACCAG CGCGCTGCAG
GCCACCAGCG CCAACCCCAC CTTGCTCAAG CTGGAGCTGA CCGAGAGCAT GCTGGTGGGT
GATGTGCAGG ACGTCATTAC CAAAATGAAC GCACTCAAAG CGCAAGGCGT GAGCTTCGCG
CTCGACGACT TTGGCACCGG CTATTCGTCG CTGTCTTACC TCAAGCGCCT GCCACTGGAC
CAGCTCAAGA TTGACCAGTC GTTTGTACGC GATCTTTTGA TCAACCCCAA TGATGCGGTG
ATCGCCCAAA CCATCGTGGC GCTAGGCCAC AATCTGGGAC TCCAAGTGAT TGCCGAGGGT
GTGGAAACAG TGGGCCAGCA CGACTATCTG GCCAGCATCG GCTGTGACGC CTTTCAGGGT
TACTATTTCG GGCGACCGGT GCCAGCGGCA GAACTGGCTT GTCTTCTAAA ACAAATCAGG
CCCTAG
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| Protein sequence | MSLPGSLCAN KGRILVVEDE MIVARDIAQQ LVALGYQVVG HATRGQEAID LAGALQPELV
LMDIQLAGAM DGIAAAQAIR LQFLLPVVFI TAFAADEVLA RAKLTEPFGY ILKPFSEREL
RTVLEMALYK HQADSQARDA ARHTQAILDG MVDGVITLNA QGLITSINQA VSTLFGYAPE
ELLGHNVAML MPSPHRSLHG GYLRRHQHTG AGCAMGQGRE VDGQRRDGSV FPISVSVSEL
MHNGQTQFIG LVHDITQRRR SEENIYRLAF YDKLTGLPNR RLLMDRLKQA LITSTRTGQH
GALILLDLDH FKQINETFGL DAGDELLQQV GQRLPTCVRD DDTVSRFGGD EFMVMLEALS
SQPQEAAIQA EAIAQKILLA LAQPYRLRGH THGTTPSIGV VMFRQAQVSL DDLLKMTDVA
MYQAKAAGRN TVRFFDPALQ ALALARTALE ENLRRGLALQ EFVLHYQIQV DHQGLPTGAE
ALLRWQHPVR GMVPPAQFIP LAEETGFILP LGQWVLESAC RQLVAWSHQR ATGSWTLAVN
VSALQFAQPD FVAHVTSALQ ATSANPTLLK LELTESMLVG DVQDVITKMN ALKAQGVSFA
LDDFGTGYSS LSYLKRLPLD QLKIDQSFVR DLLINPNDAV IAQTIVALGH NLGLQVIAEG
VETVGQHDYL ASIGCDAFQG YYFGRPVPAA ELACLLKQIR P
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