Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_0861 |
Symbol | |
ID | 3963772 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 898607 |
End bp | 899599 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637915689 |
Product | secretion protein HlyD |
Protein accession | YP_522140 |
Protein GI | 89899669 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0209949 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCTCAC GGACTCGGAA AATCCTGGCG ATAGCTGCCC TGTTGACGCT GGTTCTGTTA GCGACCGTTT GGCGAACGCA GTTGCTGGCG CTCTTGAAAG CCAAGGACGA AACCAATGTC TTGAGTCTGT CCGGCAATAT CGAAGCCCAT GAGAGCGTGC TTGGCTTTAA GACCGTGCAG TCTCGCATCG TCGAACTCCC CTTCCATGAG GGCCAGTGGG TCAGCAAGGG GACGGTGCTC GCCGTCGTCG ACGACGCCGA CTATCGGCAA CAAATGGCAA TCGCTGAAAG TAACCTGGCG GTTCAAAAAC AGCAACTCGA AGCAGCGCGT CAAAACCTTT ATACGGCGGA GCGTACGTTG CTGGTTGATC AGGCGGAAGT CAGGCAGCGC CAGCTTGACC AGCAACGTGC GCTGGATCTG CAACAGCAGG GGTTTACCTC GAAGGCGACG CTGGACCAGG CTGACACAGC GCTGAAACAA GCCAGTGCGG TGCTACAGCG AGACCAGTCG CTGCAGACCG CAGCGGCGCG AGCCATAGAC GTCGCCAAAG CCAGCGTACA TAGCGGTGAA GCCGCGGTCG CGCTGGCACG CATCGTTCTG AGTTACACGA CACTGAGGGC GCCGTTCGAC GGGGTCGTGA ACGTGCAGCA GGCCGAGGTC GGCGAGATCG TGGTGCCTGG CACGCCGGTG CTGACGCTGG CCGACCTTGA CCACGTCTGG TTGCGCGCTT ACCTGAATGA ATCCGACTTG GGTCGCGTGC GAATGGGTCA GGAGGTGAGC GTCAGCAACG ACAGTGATCC AAACAGGCGC TACCAAGGTC GCATCAGCTT CATTTCAGAG AAGGCGGAAT TCACACCCAA GAGCGTCGAG ACCCACGCCG AGAGGGTGAA CTTGGTCTAT CGGATCAAGA TCGATATTGC CAATCCAGAA CATGAACTCG TTCCCGGGAT GCCGGCAGAC GCACGCATCG CATTGCACAC AGCGGGATCC TGA
|
Protein sequence | MTSRTRKILA IAALLTLVLL ATVWRTQLLA LLKAKDETNV LSLSGNIEAH ESVLGFKTVQ SRIVELPFHE GQWVSKGTVL AVVDDADYRQ QMAIAESNLA VQKQQLEAAR QNLYTAERTL LVDQAEVRQR QLDQQRALDL QQQGFTSKAT LDQADTALKQ ASAVLQRDQS LQTAAARAID VAKASVHSGE AAVALARIVL SYTTLRAPFD GVVNVQQAEV GEIVVPGTPV LTLADLDHVW LRAYLNESDL GRVRMGQEVS VSNDSDPNRR YQGRISFISE KAEFTPKSVE THAERVNLVY RIKIDIANPE HELVPGMPAD ARIALHTAGS
|
| |