| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0778 |
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| Symbol | |
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| ID | 3964196 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 814467 |
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| End bp | 816059 |
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| Gene Length | 1593 bp |
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| Protein Length | 530 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637915608 |
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| Product | sigma-54 (RpoN) |
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| Protein accession | YP_522059 |
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| Protein GI | 89899588 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACAAG GCCTTTCCCT TCGGGTTTCG CAGCATCTGG CGCTGACGCC ACAGTTGCAG
CAGTCGATCC GCTTGCTGCA ACTCTCCACG CTGGAGCTCA GCGCGGAGGT GGACCAGATG
CTCGATGACA ACCCGTTTCT GGAGATGACG GCAGACGAGT CGCCGCGTGA GGAATTTGGT
CTGGCGCAGG CTGACACACC GGTCCGGGGT GATGACCTCG ACGCTGAACG TGCTACAAGT
TCGGTAGCTG ACTATCCAAC AGAGACGAGG GCTACAGCCG AGAATGATTC AAATGATTCG
CCGCTCTCGG CGGACGATGC GCAGAGTTGG GAGGGCGACG GCAGCGCCTC CTTGGCGCCC
GATGACAGCG AGTGGGGCGG TGACGCCAAA GCCCGCAGCA ACAACCTCAA CGGCGATGAC
GACGCCGATG TGACCGAGCT GGCGCGCACC CAGGTGTCGC TGCAAAGCCA CCTGCACGCG
CAGGCGCTGG CCTTGCGCCT GAGTGCCGAG GATCGCGCCG CCTTGCAGTT CTTGATCGAG
TCGCTTAATG ACGATGGTTA TCTGGAAGAC ACGCTGACCT CGCTCGCCGA GGGGCTCGCC
GGCGGCGATG AGGCCCAGGT GGAGCAGCTG GTCCACCATT TCACGGTCGC CTTGGGGCTG
CTGCAGAGCC TGGAGCCGGC GGGTGTGGGT GCGCGAGATC TGGCGGAATG CCTGAGTCTG
CAACTGCGCG CCTTGCAGCA GCTGGAGCGG CTAGAGCCGG CCCGCGCCGC CACCGTGCAG
GTGGCGCTGC GTATTTGTGC CCAACCCATG GAGTTGCTGG CCCGGCGTGA CGTCAAGCGC
CTGATGCTGC TGTGCGACGC GACGGATGCT GCCGTGCGCG AAGCCATTGC GCTGATCGCC
CGTCTGGAGC CCAAGCCGGG GCGGCGCTTC GTGAATGTGG AGCGCAACAT CGTGGTGCCC
GATGTCCTGG TGATTCAAGT GGGCCAGGGT ACGCAGGCCA AATTTCAGGT GCGCCTGAAC
ACCGATGTGA TGCCGCGCCT GCGCGTGCAC GACATCTACG CCAATGCCAT CAAACAGCAC
AAGGGCGGCG GCAACGATGC GTCCAGCTAC GCCGCCCTGC AGCAGCGCCT GCAGGAGGCA
CGCTGGTTCA TCAAGAACAT CCAGCAGCGC TTTGACACCA TCCTGCGCGT CAGCTCGGCC
ATCGTCGAGC GGCAAAAGAG TTTTTTCATG CATGGCGAAC TCGCCATGCG CCCGCTGGTG
CTGCGTGAGA TTGCCGAAGA GCTCGGTCTG CACGAGTCCA CCATCAGCCG CGTGACCACC
GCCAAATACA TGGCGACCCC GTTTGGCACC TTCGAGCTCA AGTATTTCTT TGGCTCCGGC
CTGGGCACCG AGTCGGGTGG CAATGCGTCG AGCACGGCGG TGCGGGCCTT GATCAAACAA
TTTATCAGCG CCGAGAGCCC GGCCAAGCCG CTCAGTGACC ACCAGTTGTC CGAGATGCTC
AAAGAGCAGG GCATCGAATG CGCCCGCCGC ACCGTGGCCA AATACCGCGA GGGGCTGCGC
ATCGCTCCCG CGAGCTTAAG GAAAGCCTTG TGA
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| Protein sequence | MKQGLSLRVS QHLALTPQLQ QSIRLLQLST LELSAEVDQM LDDNPFLEMT ADESPREEFG
LAQADTPVRG DDLDAERATS SVADYPTETR ATAENDSNDS PLSADDAQSW EGDGSASLAP
DDSEWGGDAK ARSNNLNGDD DADVTELART QVSLQSHLHA QALALRLSAE DRAALQFLIE
SLNDDGYLED TLTSLAEGLA GGDEAQVEQL VHHFTVALGL LQSLEPAGVG ARDLAECLSL
QLRALQQLER LEPARAATVQ VALRICAQPM ELLARRDVKR LMLLCDATDA AVREAIALIA
RLEPKPGRRF VNVERNIVVP DVLVIQVGQG TQAKFQVRLN TDVMPRLRVH DIYANAIKQH
KGGGNDASSY AALQQRLQEA RWFIKNIQQR FDTILRVSSA IVERQKSFFM HGELAMRPLV
LREIAEELGL HESTISRVTT AKYMATPFGT FELKYFFGSG LGTESGGNAS STAVRALIKQ
FISAESPAKP LSDHQLSEML KEQGIECARR TVAKYREGLR IAPASLRKAL
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